Detailed information on CNT30261746


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Brassica rapaCorylus avellana46.8131.0787.27110reverse complement
CNT30518096Brassica rapaJuglans regia62.1342.3284.93146reverse complement
CNT30703743Brassica rapaQuercus lobata60.8551.0784.62143reverse complement
CNT30272829Brassica rapaChenopodium quinoa32.3424.7690.7976forward
CNT30381728Brassica rapaManihot esculenta26.8120.4588.8963forward
CNT30406606Brassica rapaBeta vulgaris28.0921.3692.4266forward
CNT30505537Brassica rapaNicotiana attenuata33.6225.8287.3479forward
CNT3044357Brassica rapaPrunus dulcis44.2634.2186.54104forward
CNT3094411Brassica rapaSolanum tuberosum34.0426.8586.2580reverse complement
CNT30587521Brassica rapaMusa acuminata25.5318.359560forward
CNT30538642Brassica rapaBrassica napus100100100235forward
CNT30172426Brassica rapaTrifolium pratense51.0639.7485120forward
CNT30145967Brassica rapaMedicago truncatula26.8121.4388.8963forward
CNT30597892Brassica rapaFraxinus excelsior35.7427.5486.984reverse complement
CNT30652801Brassica rapaRosa chinensis46.3835.6287.16109forward
CNT30213194Brassica rapaHelianthus annuus61.747.0883.45145forward
CNT30714783Brassica rapaMalus domestica golden26.3820.3993.5562forward
CNT30410045Brassica rapaPapaver somniferum25.5320.2791.6760reverse complement
CNT30572433Brassica rapaVitis vinifera42.9818.3385.15101reverse complement
CNT3058191Brassica rapaAmborella trichopoda32.7725.0889.6177forward
CNT30319113Brassica rapaAsparagus officinalis26.817.8390.4863reverse complement
CNT30723384Brassica rapaLupinus angustifolius6046.3881.56141forward
CNT3050501Brassica rapaCucumis sativus24.2618.6994.7457forward

Expression of CNT30261746

Peptides detected in this lncRNA

>peptide 1 (41 aa)
EYFVGVIGWGYLWHAHSKLGVEACSLSEGLGHVFLRVGETA*

Sequence

>CNT30261746
GAATATTTTGTAGGAGTTATCGGTTGGGGCTATTTATGGCATGCCCATTCCAAGTTGGGAGTTGAGGCATGCAGCTTGAGCGAAGGCTTGGGTCACGTGT
TTCTTAGAGTGGGGGAGACTGCGTGAGGCTGGTTTCACAGAGCAGCGTAAACCTCCCGCTCTTGACGGTGGAAGGATAACGGGGGCTTTCGCCTTCTGAG
CCCACTATGACCCATTAAACCGATTCCGATTGGAC