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Detailed information on CNT30534416


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 3e-179

BLAST vs NONCODE:
NONBNAT005173, E-value = 3e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316082Eucalyptus grandisCorylus avellana59.5970.5684.8671forward
CNT30616124Eucalyptus grandisSesamum indicum58.7958.0286.56662forward
CNT30709643Eucalyptus grandisGlycine max44.1451.6186.52497forward
CNT30284133Eucalyptus grandisTriticum aestivum54.7144.3284.9616forward
CNT30383589Eucalyptus grandisTriticum turgidum54.7180.9584.9616forward
CNT30623366Eucalyptus grandisDaucus carota58.763.582.75661forward

Expression of CNT30534416

Peptides detected in this lncRNA

>peptide 1 (34 aa)
EIGQDQDRLDHRKLWRTRFADKSMKVKWQIMKEN*

>peptide 2 (39 aa)
MEILPLPRSSGVEGESFTACPARDGEERAMVEAAIVEWI*

>peptide 3 (43 aa)
MACTKNPNMENMASLPFLISFTLSSAKASGSSARPKGSKLPPG*

>peptide 4 (46 aa)
MPLRARSSGKTHPRAPSMAHLQWMTSSSRFLAKVSGSAESPAVSQP*

>peptide 5 (71 aa)
MGLGTWRGLDHTMGSQRRLACGRPSSWRFSHCREAREWRGRASPPVQPGMERREPWWKPPLLSGFESLTSV*

Sequence

>CNT30534416
GAAATTGGGCAAGATCAAGATCGCTTGGACCATAGAAAGCTTTGGAGGACAAGGTTTGCAGATAAATCTATGAAGGTTAAGTGGCAAATAATGAAGGAAA
ACTAGGGAACAAACGTGGGAGTCGAGTCGAAAAAGGAAGGAAGATGATTGAAGATGTCACTCAAGAGTCAAGCCAGCGGCAATACATGTAATTTACACTT
CTGAAAGTATCGTTTCCAACCGAACTGTATATCACCCCTCACGCTCACTTTCCAGGGACGAAGTTGGTGGCATAGGCCCAAGCATTGTTGTTAACTGGAT
CAGCAAGGTGGTCAGCCAAGTTCTCCAATGGACCCTTTCCTGTCACAATGGCCTGCACGAAGAACCCAAACATGGAGAACATGGCAAGCCTGCCGTTCTT
GATCTCCTTCACCTTGAGCTCGGCAAAGGCCTCAGGGTCATCGGCCAGGCCCAAGGGGTCGAAGCTCCCCCCGGGGTAGAGCGGGTCGGTGACCTCACCG
AGCGGGCCACCAGCAATACGGTAACCCTCGACGGCTCCCATCAGGATGACTTGGCAGGCCCAGATGGCCAAGATGCTTTGGGCGTGGATCAGGTTGGGGT
TGCCCAGGTAGTCGAGCCCTCCCTCGCTGAAGATCTGGGCGCCAGCCTTGAACCACACGGCCTCACCGAACTTGATGCCGTTGCGGGCCAGGAGCTCGGG
GAAGACGCACCCCAGGGCACCGAGCATGGCCCACCTGCAGTGGATGACTTCAAGCTCGCGGTTCTTGGCAAAGGTCTCGGGGTCGGCCGAGAGTCCGGCG
GTGTCCCAGCCATAGTCACCGGGGAACTCGCCAGTGAGGTAGCTCGGGGGCTCGCCGGAGAATGGGCCTAGGTACTTGGCGCGGTCTGGACCATACCATG
GGCTCCCAGAGGAGACTGGCTTGCGGACGGCCTTCCTCATGGAGATTCTCCCATTGCCGAGAAGCTCGGGAGTGGAGGGGGAGAGCTTCACCGCCTGTCC
AGCCAGGGATGGAGAGGAGAGAGCCATGGTGGAAGCCGCCATTGTTGAGTGGATTTGAGAGCTTGACCTCTGTCTAGTGTTGAAATAGAGAGTTGAGATG
GATTGGCGATGGTTGTTGGGACTTGT