« Back to Medicago truncatula search


Detailed information on CNT30145117


BLAST search results

BLAST vs Swiss-Prot:
sp|P07371|CB22_PEA, E-value = 6e-137

BLAST vs NONCODE:
NONMTRT001605, E-value = 1e-128

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548555Medicago truncatulaIpomoea triloba26.8548.7288.66247forward
CNT30373848Medicago truncatulaArabidopsis thaliana4539.5483.33414forward
CNT30709643Medicago truncatulaGlycine max44.6742.6887.59411forward
CNT3046345Medicago truncatulaPrunus dulcis29.8956.0185.82275forward
CNT30539881Medicago truncatulaBrassica napus25.7630.9888.19237forward
CNT30237472Medicago truncatulaBrassica oleracea21.324.8188.27196forward
CNT30313642Medicago truncatulaCamelina sativa40.1167.3484.01369forward
CNT3078262Medicago truncatulaBrassica juncea50.8768.0283.33468forward
CNT30202642Medicago truncatulaHelianthus annuus26.0943.0986.67240forward
CNT30714756Medicago truncatulaMalus domestica golden50.8746.1183.33468forward
CNT30356894Medicago truncatulaLactuca sativa47.6147.9287.21438forward
CNT30417231Medicago truncatulaPapaver somniferum39.3548.6684.25362forward
CNT30176337Medicago truncatulaVigna angularis25.4323.0888.89234forward

Expression of CNT30145117

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MDQTWVTQVVKSTLAKDLGSGLEPYSLTEFNTIARQKLWENTSQVHGSWRMSLGQQKVQQCPIRSHLGTLQSSKTGAHQRMGLST*

>peptide 2 (77 aa)
FSCIQHMIIIHIPAGRTLQESIHNKKHNDHSLSGNKVGGIGPCVVVDWVGKMIGKVLQRSLSGHNSLNKESEHREHG*

>peptide 3 (47 aa)
MANLPFLSSLTFNSAKASGSSARPNGSKLPPGYSGSTTSPRGPPAIR*

>peptide 4 (36 aa)
MVNLAAPNSWLEGVSLTGLPAKVGEERAMDDAAILQ*

>peptide 5 (31 aa)
MGQSCLLGIVGQQPHQEDHQQYGNLQQRPSR*

Sequence

>CNT30145117
ATTCAGTTGCATACAACACATGATAATAATTCACATTCCCGCAGGAAGAACGTTACAAGAAAGTATACATAACAAAAAACATAATGACCATTCACTTTCC
GGGAACAAAGTTGGTGGCATAGGCCCATGCGTTGTTGTTGACTGGGTCGGCAAGATGATCGGCAAGGTTCTCCAAAGGTCCCTTTCCGGTCACAATAGCC
TGAACAAAGAATCCGAACATAGAGAACATGGCTAATCTACCGTTCTTGAGTTCCTTAACCTTCAACTCTGCGAAAGCCTCTGGGTCGTCAGCTAGGCCCA
ATGGGTCAAAGCTGCCTCCTGGGTATAGTGGGTCAACAACCTCACCAAGAGGACCACCAGCAATACGGTAACCTTCAACAGCGCCCATCAAGATAACTTG
GGTAGCCCAGATGGCAAGAATGCTCTGAGCATGGACCAAACTTGGGTTACCCAAGTAGTCAAGTCCACCCTCGCTAAAGATCTGGGATCCGGCCTTGAAC
CATACAGCCTCACCGAATTTAACACCATTGCGAGACAAAAGCTCTGGGAAAACACATCCCAAGTTCACGGTTCTTGGCGAATGTCTCTGGGTCAGCAGAA
AGTCCAGCAGTGTCCCATCCGTAGTCACCTGGGAACTCTCCAGTCAAGTAAGACGGGGGCTCACCAGAGAATGGGCCTAAGTACTTAACACGGTCTGGGC
CGTACCATGGGCTTCCTGAGGAGGCTACTTTCTTGGTGGTAGCAGCCTTCCTCATGGTGAACCTTGCAGCTCCCAATTCTTGGCTTGAAGGGGTTAGCTT
GACTGGCTTGCCAGCCAAGGTTGGTGAAGAGAGAGCCATGGATGATGCGGCCATTTTGCAATGAAATTAAAATGCTTGTTGTGCTTTTGATAAATGTACT
CGTATGAATGGTGATTTGGT