Detailed information on CNT30685008


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 7e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186790Triticum urartuSecale cereale75.2677.0295.17724forward
CNT30552150Triticum urartuOryza glaberrima59.6767.4590.59574forward
CNT30251359Triticum urartuAvena sativa64.6665.3495.34622forward
CNT30665098Triticum urartuTriticum dicoccoides85.45101.4898.05822forward
CNT30456534Triticum urartuSaccharum spontaneum48.8692.3492.34470forward
CNT30596853Triticum urartuOryza meridionalis48.8647.7292.34470forward
CNT30369254Triticum urartuOryza glumipatula45.9542.8390.95442forward
CNT30103505Triticum urartuOryza rufipogon48.7556.9292.11469forward
CNT30575045Triticum urartuOryza barthii52.753.7189.35507forward
CNT30582321Triticum urartuEchinochloa crusgalli51.7752.3191.57498forward

Expression of CNT30685008

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFCFG*

>peptide 3 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30685008
ACAAGTAGTTAAGCAGAAGAACAGAGATGCCTTGATTGATCTGAAAAATAACCAGATACATTACACAAACACCATCTTGTAGTGTACACACACCAACTCC
TCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCA
TCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGG
GTCGGCGAGGTGGTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCC
TCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGC
TGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCAT
GGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCACCGGGGAAC
TCGCCGGTGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCT
CGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGC
TGGCTTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCGTTGGTGCTGT