Detailed information on CNT30575045


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 4e-153

BLAST vs NONCODE:
NONBNAT007398, E-value = 3e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695874Oryza barthiiOryza sativa72.7864.3992.29687forward
CNT30521860Oryza barthiiSetaria italica62.6152.7288.16591forward
CNT30641326Oryza barthiiNymphaea colorata56.0447.3688.09529forward
CNT30534338Oryza barthiiEucalyptus grandis63.0352.886.22595forward
CNT30188246Oryza barthiiSecale cereale66.4259.2191.71627forward
CNT30285424Oryza barthiiTriticum aestivum50.6467.1394.14478forward
CNT30225179Oryza barthiiHordeum vulgare62.7160.7885.81592forward
CNT30395285Oryza barthiiTriticum turgidum62.3956.5388.62589forward
CNT30552150Oryza barthiiOryza glaberrima53.8159.6998.43508forward
CNT30443381Oryza barthiiAegilops tauschii58.0556.6189.78548forward
CNT30241722Oryza barthiiAvena sativa72.6765.9688.19686forward
CNT30668524Oryza barthiiTriticum dicoccoides62.9266.0790.07594forward
CNT30455809Oryza barthiiSaccharum spontaneum74.6864.7490.64705forward
CNT30141287Oryza barthiiLolium perenne62.3957.9287.61589forward
CNT30129910Oryza barthiiCorymbia citriodora33.1649.6894.25313forward
CNT30685008Oryza barthiiTriticum urartu53.7152.789.35507forward
CNT30345522Oryza barthiiEragrostis tef57.254.3894.07540forward
CNT30363150Oryza barthiiSorghum bicolor56.364492.67532forward
CNT30369254Oryza barthiiOryza glumipatula62.6157.2797.12591forward
CNT30582523Oryza barthiiEchinochloa crusgalli61.5556.0890.53581forward
CNT30497363Oryza barthiiDigitaria exilis63.2450.7291.12597forward
CNT30604592Oryza barthiiOryza punctata63.0359.6893.78595forward

Expression of CNT30575045

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARPSGSKLPPG*

>peptide 2 (49 aa)
KYSGTRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

>peptide 3 (31 aa)
MRYPSTAPMSTTWQPQIARMLCAWIRLGLPR*

>peptide 4 (42 aa)
IFGYAERGERRASHRSLHESNGPHRRCSPEIHTHLPGTKLVA*

Sequence

>CNT30575045
AAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACAC
TCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCCAGGTTCTCCAGTGGCCCCTTGCCGGTG
ACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAACGCCTCGGGGTCGTCGG
CGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAG
CACGACCTGGCAACCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCCCCCTCGCTGAAGATCTGGGACCCC
GCCTTGAACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATNGCCCACCGGCAGTGGA
TCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTGAGCGGGCC
GAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCGGCGGGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCG
AACACCTTGGCATTGGCGACCGCCTTGCCGGCGAGGGCGGCAGGGGAGGAGAGTGCCATGGTGGACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAG
ATGGCCACAGATGCTTTTGGAATGTGTGTCTTTTGAGCTCGTGA