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Detailed information on CNT30186790


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-125

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641294Secale cerealeNymphaea colorata48.7245.2188.21458forward
CNT30552192Secale cerealeOryza glaberrima58.8366.6391.86553forward
CNT30251359Secale cerealeAvena sativa77.1376.1690.21725forward
CNT30665098Secale cerealeTriticum dicoccoides75.7487.996.77712forward
CNT30685008Secale cerealeTriticum urartu77.0275.2695.17724forward
CNT30345516Secale cerealeEragrostis tef48.8361.6993.9459forward
CNT30596901Secale cerealeOryza meridionalis48.7246.9791.48458forward
CNT30369254Secale cerealeOryza glumipatula46.3842.2591.06436forward
CNT30103289Secale cerealeOryza rufipogon48.6241.7491.25457forward

Expression of CNT30186790

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGR

Sequence

>CNT30186790
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGA
CTCGCCCTCACATGCAACATCTATCAGTCCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCC
GCGCGTGCACGCACGCGCTAGAGCTAGAGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGG
CGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCCGGCCACGCGGTAGCCCTCCACGGCGCCCATGAG
CACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACGAGGCTGGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGGGACCCG
GCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCCAGCGCGCCGAGCATGGCCCAGCGGCAGTGGA
TCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCCCCGGGGAACTCGCCGGTGAGGTAGAG
CACGCGGTCGGAGCCGTACCACGGGCTGCTGGAGGCGGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCC
CTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCGCGCTGCGGACTCGCTAGCTTTCTTGCTTCGG
GTGAGCTGAGGCTGACTGTAGGAGGCGCTGGTGGTCGTTG