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Detailed information on CNT30596853


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 4e-120

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30251387Oryza meridionalisAvena sativa55.1352.2691.16543forward
CNT30685008Oryza meridionalisTriticum urartu47.7248.8692.34470forward
CNT30345513Oryza meridionalisEragrostis tef56.4559.9191.55556forward
CNT30556644Oryza meridionalisPanicum hallii50.0557.5391.48493forward

Expression of CNT30596853

Peptides detected in this lncRNA

>peptide 1 (31 aa)
YVFRLYYIIRMVIFWDRWSICFQPNRDDQIR*

>peptide 2 (37 aa)
MIKSANQNNGQISTKTISWETNKIIIAKTSSSSSSSS*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

Sequence

>CNT30596853
TATGTATTTAGACTATACTACATAATCAGAATGGTTATATTTTGGGATCGATGGAGTATTTGTTTCCAACCTAATAGAGATGATCAAATCCGCTAATCAG
AATAACGGACAGATAAGTACCAAGACCATCAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCATCTTCTTCTTCTTCTTAGTGTACAC
AACACCAACTCGATCATCATCTCGTCGCACCAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATTTCAACTACGCTCCCCT
CTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCC
GGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGG
ATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCCCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACT
TGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAA
CGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCAGCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGG
TAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCCGGCTTGGGCTTCGCGGCGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGG
AGAGCGCCATGGTGGCCGCGGCCATTGATGCACTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGAGTGAGTTGGGAGTT