Detailed information on CNT30582321


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 5e-136

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188246Echinochloa crusgalliSecale cereale61.4555.2491.45585forward
CNT30250278Echinochloa crusgalliAvena sativa61.4558.9191.45585forward
CNT30665098Echinochloa crusgalliTriticum dicoccoides52.3161.4891.57498forward
CNT30685008Echinochloa crusgalliTriticum urartu52.3151.7791.57498forward
CNT30149090Echinochloa crusgalliBrachypodium distachyon43.842.7390.17417forward

Expression of CNT30582321

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (47 aa)
MVTRASPKRDDGTLTALPAKAVEERAMVLVAIALLTPRCLVVYAGVRL

>peptide 3 (88 aa)
MVQTETSARSHPDTLQHIEQFGINASLAGHEVGGVGPGIVVDGVGEVVGKKPNMENMARRPFLSSLTLSSAKASGSSARPSGSKLPPG*

>peptide 4 (29 aa)
KERKRTSWVGRDTIQSDNEHCNSFSVEPS*

>peptide 5 (36 aa)
RKEKGRAGLDGIQYNQTMNTAIPSRLNPRNLHHGTN*

Sequence

>CNT30582321
AAGGAAAGAAAAAGGACGAGCTGGGTTGGACGGGATACAATACAATCAGACAATGAACACTGCAATTCCTTCTCGGTTGAACCCTCGTAATTTACACCAT
GGTACAAACTGAAACCAGTGCGCGCTCACATCCGGACACCCTACAGCATATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGCACGAAGTTGGTGGC
GTAGGCCCAGGCATTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCATTCTTGAGCTCCTTGACCT
TGAGCTCAGCGAAGGCCTCTGGGTCGTCTGCCAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCTCCGAGCGGGCCGCCGGC
AATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCATATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGATTGCCGAGGTAGTCA
AGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGA
GCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCACGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGCCGTA
GTCGCCGGGGAACTCGCCGGTCAGCGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTACCACGGGCTGCCGGAGGCGGCCGGCTTGGGCTTCGCTGCTGTC
TTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTGACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGGGCCATGGTGCTGGTCGCCA
TTGCGCTGCTAACACCGAGGTGTCTTGTGGTTTATGCAGGGGTGAGACTCGC