Detailed information on CNT30552150


BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 7e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395103Oryza glaberrimaTriticum turgidum48.7745.693.73415forward
CNT30589999Oryza glaberrimaMusa acuminata43.8369.289.01373forward
CNT30250185Oryza glaberrimaAvena sativa67.169.3889.67571forward
CNT30456534Oryza glaberrimaSaccharum spontaneum54.6491.3693.12465forward
CNT30685008Oryza glaberrimaTriticum urartu67.4559.6790.59574forward
CNT30345513Oryza glaberrimaEragrostis tef54.4149.8994.38463forward
CNT30575045Oryza glaberrimaOryza barthii59.6953.8198.43508forward
CNT30582821Oryza glaberrimaEchinochloa crusgalli59.5854.2890.93507forward

Expression of CNT30552150

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHRQWITSSSRFLANVSGSADSPAVSQP*

>peptide 2 (29 aa)
LFESAYISMYHGVFRSIPPGKLISQEQIR*

>peptide 3 (31 aa)
MKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

Sequence

>CNT30552150
ATTATTTGAGTCCGCGTACATTTCCATGTACCATGGGGTATTCCGTTCCATACCGCCAGGCAAACTGATTTCCCAGGAACAAATCAGATAAAAATTATTT
TACACAATCAGGTCCATTGTACTTCTTTCATCAACCAACCAGATAACATTGTTTTACACAATCTGAACGAACGAAGCAAATATTCGGGTACGCGGAAAGA
GGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACACTCACTTGCCGGGGACGAAGTTGG
TGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCCAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTC
GCCGAGCGGGCCGCCGGCGACGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGGCAACCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAGGCTG
GGGTTGCCGAGGTAGTCGAGCCCCCCCTCGCTGAAGATCTGGGACCCCGCCTTGAACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCT
CCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCCGACAGCCC
GGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCGGCG
GGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAAC