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Detailed information on CNT30456534


BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 6e-112

BLAST vs NONCODE:
NONBNAT007398, E-value = 1e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395103Saccharum spontaneumTriticum turgidum82.1245.9392.82418forward
CNT30589999Saccharum spontaneumMusa acuminata73.2869.288.74373forward
CNT30552150Saccharum spontaneumOryza glaberrima91.3654.6493.12465forward
CNT30685008Saccharum spontaneumTriticum urartu92.3448.8692.34470forward

Expression of CNT30456534

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTWHAQMARMLCAWIRLGLPR*

>peptide 2 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (96 aa)
TRTQACPHSLAGDEVGGVGPGVVVDRVGEVVGEPEWVEAAARVQRVDHLPERATGDAVPLDGAHEHHLARPDGQDALRVDQARVAEVVKPALAEDL*

Sequence

>CNT30456534
TACACGCACGCAAGCATGCCCTCACTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGGCGAG
CCCGAGTGGGTCGAAGCTGCCGCCAGGGTACAGCGGGTCGACCACCTCCCCGAGCGGGCCACCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACC
ACCTGGCACGCCCAGATGGCCAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCAAGCCCGCCCTCGCTGAAGATCTGTGACCCGGCCT
TGAACCACACGGCCTCGCCAAACTTGACGCCGTTGCGGGCGAGGAGCTCCGGGAACACGCACCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCAC
CTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCCGCGGACAGCCCAGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTTGGG
GGCTCGCCG