Detailed information on CNT3067359


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692798Leersia perrieriOryza sativa28.5437.4695.04121forward
CNT30464818Leersia perrieriSaccharum spontaneum28.775.6885.25122forward
CNT30132470Leersia perrieriLolium perenne35.8516.0783.55152forward
CNT303809Leersia perrieriZea mays27.5935.8982.05117forward
CNT30352097Leersia perrieriEragrostis tef37.0337.6581.53157forward
CNT30101514Leersia perrieriOryza rufipogon50.2439.0894.37213forward
CNT30576226Leersia perrieriOryza barthii50.2440.3494.37213forward
CNT30116488Leersia perrieriOryza nivara50.2437.6394.37213forward
CNT30604034Leersia perrieriOryza punctata5045.1194.81212forward

Expression of CNT3067359

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEQCLVVGSELVVVVEHLGLVQEVEDCTC*

>peptide 2 (31 aa)
DPRQQVVEVVVAELVSPMDNMKHNHKEVEGT*

>peptide 3 (32 aa)
MKHMVVVAVAPKELGHSSLEVAAVVPPCRAVRC

Sequence

>CNT3067359
GGGATCCGCGCCAGCAGGTGGTGGAGGTGGTGGTGGCTGAACTGGTGTCACCGATGGATAATATGAAGCATAACCATAAGGAGGTGGAGGGTACATAGGT
GGTGCATTTGGTGCACCGGAAGTTCCATATACTGGAGCTGGGACAGGTTGAGCAGGTGCACCAGAGCTTGGTGGTGTTACACCAGGAGGGTAATTCTGTG
CCCCATCATTTGATGGAGCAGTGCCTGGTGGTGGGATCGGAGCTGGTGGTGGTGGTGGAGCACCTTGGCCTGGTGCAGGAGGTGGAGGATTGTACATGCT
AGAACCTGGTGGCGGCGGAGGGTATGAAGCATATGGTGGTGGTGGCGGTTGCCCCCAAGGAACTGGGGCATAGCTCCCTGGAGGTGGCGGCGGTGGTGCC
CCCATGTAGGGCTGTGAGGTGTAG