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Detailed information on CNT30132470


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692798Lolium perenneOryza sativa2470.2881.06227forward
CNT30464818Lolium perenneSaccharum spontaneum21.049.2684.92199forward
CNT3067359Lolium perenneLeersia perrieri21.0446.9383.92199forward
CNT30681520Lolium perenneTriticum urartu41.5496.5687.79393forward
CNT30352097Lolium perenneEragrostis tef18.9242.9383.24179forward
CNT30101514Lolium perenneOryza rufipogon55.596.3381.14525forward
CNT30576226Lolium perenneOryza barthii52.8594.781500forward
CNT30116488Lolium perenneOryza nivara55.592.7681.33525forward
CNT30604034Lolium perenneOryza punctata40.4981.4981.2383forward

Expression of CNT30132470

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MSSHVGLRVVTTSRRICRVVHWWARGSSRLWWLACNSNRDSSPLKMVTTHRSNCSISLGDICIFHKSISFALPRVTILDNLCHDNLPKLREQTDKP*

>peptide 2 (81 aa)
MEVEQSGLVQDCTCLAVAVEGMKHKVVVAPKVLEHSYLEEVVVVDVLPCRAASCNHQQKDLQSGTLVGQGEQPAVVACLQL*

>peptide 3 (50 aa)
MTEEVVAAVHCDWPKVHLNCSARNQPLVVAEAVHCGWPKVLLQCFATDQH*

>peptide 4 (38 aa)
MRHVLCTRGSISWSWYRLSRCTRTWWRHTRRVVLRSIS*

>peptide 5 (30 aa)
MGRNYKVVEGTYEACFVHQRFHILELVQAE*

Sequence

>CNT30132470
CCTTTCCCAGTGTTGAAAGAATGCACCAGCTTGACTCATATCATTTCATTTCTGACATAAATTTTTCATACTCTGCATCAGCACCATAGGGAGCAGGGGG
TTGTTCAATGGAAGATGACAGAGGAGGTGGTGGCGGCGGTGCATTGTGATTGGCCCAAGGTGCACTTGAATTGCTCTGCGAGGAATCAACCGCTGGTGGT
GGCGGAGGCGGTGCATTGTGGGTGGCCCAAGGTGCTGTTGCAATGCTTTGCGACGGATCAACACTAGCTGGTGGTGGCGGAGGCGGGGGCACAGATTGAT
AATATGGGGCGTAACTATAAGGTGGTGGAGGGTACATATGAGGCATGTTTTGTGCACCAGAGGTTCCATATCCTGGAGCTGGTACAGGCTGAGTAGGTGC
ACCAGAACTTGGTGGCGTCACACCCGGAGGGTAGTTCTGCGCTCCATCAGCTGATGCAGTAGTGCCTGGTGGAGGTACCGGAGCTGGTGGTGGTGGGTAC
TGCATACCATATGGAGGTGGAGCAGTCTGGCCTGGTGCAGGATTGTACATGCCTGGCGGTGGCGGTGGAGGGTATGAAGCATAAGGTGGTGGTTGCCCCC
AAGGTGCTGGAGCATAGTTACCTTGAGGAGGTGGTGGTGGTGGATGTCCTCCCATGTAGGGCTGCGAGTTGTAACCACCAGCAGAAGGATCTGCAGAGTG
GTACATTGGTGGGCCAGGGGGAGCAGCCGGCTGTGGTGGCTTGCCTGCAACTCTAACCGCGATAGTTCTCCCCTCAAGATGGTAACCACTCATCGCAGCA
ATTGCAGCATTAGCCTGGGAGACATCTGCATATTTCACAAATCCATATCCTTTGCTCTGCCCCGTGTTACGATCCTTGATAACCTTTGCCATGACAATCT
CCCCAAACTGAGAGAACAGACTGATAAGCCCTGAATCATCAAACAT