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Detailed information on CNT30464818


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LU44|SF1_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692798Saccharum spontaneumOryza sativa8.153.8782.18174forward
CNT30403830Saccharum spontaneumBeta vulgaris13.3622.8382.58287forward
CNT30132470Saccharum spontaneumLolium perenne9.2621.0484.92199forward
CNT303809Saccharum spontaneumZea mays15.32100.9292.4329forward
CNT3067359Saccharum spontaneumLeersia perrieri7.7339.1585.54166forward
CNT30681520Saccharum spontaneumTriticum urartu7.3638.8284.81158forward
CNT30352097Saccharum spontaneumEragrostis tef10.4753.9683.56225forward
CNT30366251Saccharum spontaneumSorghum bicolor11.5562.4789.92248forward
CNT30101514Saccharum spontaneumOryza rufipogon13.3652.6683.28287forward
CNT30576014Saccharum spontaneumOryza barthii14.5367.8383.33312forward
CNT30116488Saccharum spontaneumOryza nivara13.3650.7183.28287forward
CNT30604034Saccharum spontaneumOryza punctata13.3661.0682.23287forward

Expression of CNT30464818

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGFLVYKTANHTQMYLAKLIEQREREIMLSYLLPFIGRIAQLCSPHITSSLT*

>peptide 2 (48 aa)
KITIWYISTMVKFKYSSIVYKYINNKTHRITATWDSLSIKQQIIPKCT*

>peptide 3 (95 aa)
MVEDSMGNNYKVVEGTSMVHLVRQMMHILMLQQGVWVRQNLVVLHQGDSSELHHLMEQCLVEGLELLGVVVVVDTASHMAVGQLDLVQEVQDCRR*

>peptide 4 (61 aa)
MDSGALPPPSSARKFWYSSSIFFPEVPLTGQSIVGCPPSPQILHCTSLLNVFILLGQAYCL*

>peptide 5 (30 aa)
MSCEMISCLSRLRRSLARYSRVLMRMPRLS*

>peptide 6 (35 aa)
MKHKVVAAPKELERNSLEEVAVVPPCRTGRNSHLK*

Sequence

>CNT30464818
GTAAGATAACTATATGGTATATCAGCACAATGGTCAAATTTAAGTATAGTAGTATAGTATATAAATATATAAATAATAAAACACACCGAATAACTGCAAC
ATGGGATTCCTTGTCTATAAAACAGCAAATCATACCCAAATGTACCTAGCGAAATTAATAGAACAGAGAGAGAGAGAGATCATGTTAAGTTACCTTTTGC
CCTTCATTGGAAGAATCGCCCAGCTTTGCTCACCTCATATCACTTCATCTCTGACATAAACTTGTCATACTCTGCATCGGCACCATAGGAAGCAGTAGGC
TGGTCGGTTGTGGACGACAAAGGTGGTGGTGGTGGCGGCGGCACTGCACTGTGAGTAGCCCAAGGTGCAGTTGCAATACTCTGAGAGGGATCAACACTAG
CCGGTGGTGGTGGAGGTGGTGGCTGAAATGGTGGAGGATAGTATGGGGAATAACTATAAGGTGGTGGAGGGTACATCGATGGTGCATTTGGTGCGCCAGA
TGATGCATATACTGATGTTGCAACAGGGTGTGTGGGTGCGCCAGAACTTGGTGGTGTTACACCAGGGGGACAGTTCTGAGCTCCATCACTTGATGGAGCA
GTGCCTGGTGGAGGGATTGGAGCTGCTGGGGGTGGTGGTGGTGGTGGATACTGCATCCCATATGGCGGTGGGGCAGCTTGACCTGGTGCAGGAGGTGCAG
GATTGTAGACGCTAGAGCCTGGTGGTGGCGGAGGATATGAAGCATAAGGTGGTGGCTGCCCCCAAGGAACTGGAGCGTAACTCCCTGGAGGAGGTGGCGG
TGGTGCCCCCATGTAGGACTGGGAGGAATAGCCACCTGAAGTAGGATCCGTAGGAGGAGGATACGATGGGGGTGCTGATACTGCTGGTGCCGGCTGTGGC
GGCTTTCCCGCAACTCTAACCGCAATAACTCTCCCTTCAACATGGTGACCATTCATTGCAGCAATCGCTGCATTGGCCTGTGACACATCTGAATACTTGA
CAAATCCATATCCTTTGCTTTGTCCAGTGTTTCGATCCTTGATCACCTTAGCCATGGCAATATCCCCAAATTGCGAAAACAGACTGACTAATCCAGCATC
ATCCATTGTAGGTGGCAGGTAGCCGATATACAGATTTGTCTCGTCATAGTCTTTCTTGATACCATTGAGCCCAGTGGCAGCGGCACCACCACCGGCTGAC
CAAGGTGGAGTTCCAGCAGAAGGACCACTGCTACCACCACTTCCTGTAAGAGCCAACATTGGACCACCAGATTTGTTCATGGACTCAGGTGCACTCCCAC
CACCAAGCTCAGCCAGGAAGTTCTGGTATTCATCGTCCATCTTCTTCCCAGAAGTGCCCTTGACCGGACAATCAATAGTCGGGTGCCCACCATCCCCGCA
GATCTTGCACTGCACATCACTCTTAAACGTGTTCATCTTGTTGGGGCAAGCATACTGCCTGTGACCAGCCTCACCACATGTCCTACAAAACTCGTCGTCC
CTAATTGTTCCATTAAGTGCGGCAAGCTCCCGGAGCTGCTGCCGCTTGTGCTCATTGAGCACCTCATCCACCGGGGTGAGCAGCTTCTCCACCATACCAG
CAGCGGCGTCCAGTGCCTCCTGCGTATCTGCCTCAACAAGCACGTGGAGGTCTTCGTTCTCGCTGGGATCGGGCTTGAGGTCCCTCTTCTGCAGCAGCTT
CCCTTCCTTGACACTACCCTTCCCCCTGATGACAATCTTGGCACCAGTCTCCTTCTCCATGCGCTTCTGCGTGTTGCCACGAGGGCCAATGATGAGGCCG
ATAAAGTTGTAGCCGGGGTACTCCTTCATGGGGATGTAGAGCTTCTTCTGGAGCTTGGGTGGGCGGTAGTCGGAGGGGGGCTTGAAGGTGGGGTTGCGGC
GGATGAGCTGCGAGATGATCTCCTGCCTCTCGCGGTTGAGGCGCTCCCTGGCGCGGTATTCGCGGGTGTTGATGCGGATGCCGAGGTTGTCGTAGATGGG
CTCGGGGGAGGGCGAACGCGCGCGTTGAGGGCGTGTACCTCGGGGTCCATCTCGGCGGCGAAGTCCTTCAGGAAGTCCGGGAGCGCGATGGCCGGGCGCG
GCTCCTCCTCGGCCCAACGCGTCTTGCGCTTCCGGCCCCCGGTCCCGC