Detailed information on CNT30116488


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692798Oryza nivaraOryza sativa57.07100100323forward
CNT30464818Oryza nivaraSaccharum spontaneum67.6717.8381.46383forward
CNT30132470Oryza nivaraLolium perenne92.7655.581.33525forward
CNT303809Oryza nivaraZea mays23.6741.182.09134forward
CNT3067359Oryza nivaraLeersia perrieri44.8859.9194.49254forward
CNT30352097Oryza nivaraEragrostis tef19.2626.1492.66109forward
CNT30101514Oryza nivaraOryza rufipogon96.2910099.82545forward
CNT30576226Oryza nivaraOryza barthii90.6497.1699.61513forward
CNT30604034Oryza nivaraOryza punctata84.1101.2894.96476forward

Expression of CNT30116488

Peptides detected in this lncRNA

>peptide 1 (43 aa)
EELLHLGSHHFISDINLSYSASAPYVAGGCSMLEGGGGGGGAL*

Sequence

>CNT30116488
GGAAGAATTGCTTCATCTTGGCTCACATCACTTCATCTCTGACATAAACTTATCATACTCTGCATCAGCACCATATGTAGCAGGAGGCTGCTCAATGCTG
GAAGGTGGTGGTGGTGGAGGCGGTGCATTGTGAGTGGCCCAAGGTGCACTTGCAATGCTCTGTGAGTGATCAGCAGTAGCTGGTGGTGGAGGTGGTGCAC
TGTGAGTTGCCCACGGTGCATTTGCAAGGCTCTGCGAGGGATCAGCGCCAGCAGGTGGTGGAGGTGGTGGCGGCTGAACTGGTGTCACCGATGGATAATA
AGAGGCATAACCATAAGGAGGTGGAGGGTACATAGGTGGCGCATTTGGTGCGCCGGAAGTTCCATATACTGGAGCTGGGACAGGCTGAGTAGGTGCACCA
GAACTTGGTGGTGTTACACCAGGAGGGTAGTTCTGCGCCCCATCAGTTGATGGAGCAGTGCCTGGTGGAGGGATTGGAGCTGGTGGTGGTGCATACTGCA
CACCATATGGAGGTGGTGTAGCTTGGCCTGGTGCAGGAGGTGGAGGATTGTACATGCTAGAACCTG