Detailed information on CNT30352097


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30464818Eragrostis tefSaccharum spontaneum53.9610.4783.56225forward
CNT30132470Eragrostis tefLolium perenne42.9318.9283.24179forward
CNT303809Eragrostis tefZea mays23.9830.6784100forward
CNT3067359Eragrostis tefLeersia perrieri41.9741.2782.86175forward
CNT30681520Eragrostis tefTriticum urartu22.0622.688.0492forward
CNT30101514Eragrostis tefOryza rufipogon26.142092.66109forward
CNT30576226Eragrostis tefOryza barthii26.1420.6491.74109forward
CNT30116488Eragrostis tefOryza nivara26.1419.2692.66109forward
CNT30604034Eragrostis tefOryza punctata38.8534.4787.04162forward

Expression of CNT30352097

Peptides detected in this lncRNA

>peptide 1 (61 aa)
WWWRWWLNWMIIWSIAIGLWRIHWRHIRCTRGCIYWSWDRLGGCTRTRWCYTRGIVLRSIT*

>peptide 2 (70 aa)
VVVAVVAELDDNMEHSYRVVEDTLEAHSVYQRMHILELGQAGWVHQNSVVLHQGDSSALHHLMEQFLVEE*

Sequence

>CNT30352097
GTGGTGGTGGCGGTGGTGGCTGAACTGGATGATAATATGGAGCATAGCTATAGGGTTGTGGAGGATACATTGGAGGCACATTCGGTGTACCAGAGGATGC
ATATACTGGAGCTGGGACAGGCTGGGTGGGTGCACCAGAACTCGGTGGTGTTACACCAGGGGGATAGTTCTGCGCTCCATCACTTGATGGAGCAGTTCCT
GGTGGAGGAGTAGGAGCTGCTGCTGCTGGTGGTGGTGGTGGTGCTCCCATGTAGGGTTGCGGGGGATAGCCACCAGAAGCGGGAGGATACAATGATGCCG
GCGGTGGTGGACCAGATGGAACAGTTGGCTGTGGTGGTTTTCCTGCAACTCTAACTGCAATAGTTCTCCCTTCCAGATGGTGACCGTTCATCGCGGCAAT
CGCTGCATTAGCCTGTG