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Detailed information on CNT30609050


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 5e-63

BLAST vs NONCODE:
NONPOPT000956, E-value = 5e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670698Gossypium raimondiiSetaria viridis30.6534.6281.58152forward
CNT30158302Gossypium raimondiiPistacia vera31.8536.3283.54158forward
CNT30612844Gossypium raimondiiArabis alpina37.327.981.62185forward
CNT30643281Gossypium raimondiiCannabis sativa33.8743.4184.52168forward
CNT3026858Gossypium raimondiiPopulus trichocarpa32.4624.9284.47161forward

Expression of CNT30609050

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MALRFRVASSSLCPPDKNTIAGTAAGTVRCKNTLCHCSTLLNVMRSVNKNFRFDDWDKATLLADGSIHS*

>peptide 2 (38 aa)
MAAYIASPLAFSWTASSVGSLALILRTARHLAKRAPAS*

Sequence

>CNT30609050
CTGCTGAAGGGCGCGTCCGAATGAGAATGAGAGTGACCATGGTTTCTTGGTCTGGAGCTTGTTCATGGCATTAAGGTTTAGGGTAGCCTCCTCCTCACTT
TGCCCACCAGACAAGAATACAATAGCTGGGACTGCAGCAGGGACAGTTCGCTGCAAGAACACGCTCTGTCACTGCAGCACACTTTTGAATGTCATGAGAT
CCGTCAACAAGAATTTCAGGTTCGACGATTGGGACAAGGCCACATTGCTGGCAGATGGCAGCATACATAGCTAGCCCGTTGGCATTTTCTTGGACTGCAA
GCTCGGTAGGCTCATTAGCACTGATCTTAAGGACAGCACGCCATTTAGCAAAGCGAGCACCAGCTTCATAGTACTTCTGGCATCGCTGTGCAAGGCCATC
CAGACCCTGGGTGAAAGTCTCGCCGTTGGTTCCATTAAGCTCAACGGTACCCTTGTCGACCTTGATGCCAGGGAGGACACCACCTTCCTTCAAAAC