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Detailed information on CNT30647172


BLAST search results

BLAST vs Swiss-Prot:
sp|P29357|HSP7E_SPIOL, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673030Rosa chinensisSetaria viridis44.2160.8781.55168forward
CNT30522726Rosa chinensisSetaria italica36.8416.9381.43140forward
CNT30617543Rosa chinensisSesamum indicum36.8415.483.57140forward
CNT30168984Rosa chinensisPistacia vera2529.6988.4295forward
CNT3094185Rosa chinensisSolanum tuberosum39.7411.3686.09151forward
CNT30225079Rosa chinensisHordeum vulgare23.4232.8483.1589forward
CNT30568743Rosa chinensisActinidia chinensis27.3733.3385.58104forward
CNT30145283Rosa chinensisMedicago truncatula37.8941.9881.25144forward
CNT30451043Rosa chinensisSaccharum spontaneum45.7920.4281.03174forward
CNT304854Rosa chinensisZea mays36.0561.9983.21137forward
CNT30685597Rosa chinensisTriticum urartu25.794983.6798forward
CNT30578217Rosa chinensisOryza barthii26.8422.7283.33102forward
CNT30112153Rosa chinensisFicus carica41.5817.5683.54158forward
CNT30114516Rosa chinensisEutrema salsugineum43.9557.1982.04167forward

Expression of CNT30647172

Peptides detected in this lncRNA

>peptide 1 (36 aa)
EECLKAQTCPASCYHESSPFHPQRLESRHRVDCLSK*

>peptide 2 (35 aa)
MLLHSSFPLKKSCNNCCTLGILVEPPTRTTSWTVLL

Sequence

>CNT30647172
GAGGAATGCCTGAAAGCTCAAACTTGCCCAGCAAGTTGTTATCACGAGTCCTCGCCCTTTCACCCTCAAAGACTTGAATCAAGACACCGGGTTGATTGTC
TGAGTAAGTAGAGAAAACCTGCTCCTTTTTTGTTGGAATTGTTGTATTCCTGGGAATTAACACGAGGAGTCACATCAAGAAGCAATAGGTCCTGCACCTT
CTCATTACCCTCACCACTAAGAATAGCCGCCTGCACAGCTGCTCCATAAGCAACAGCTTCGTCTGGGTTGATGCTTTTGCACAGTTCCTTTCCATTGAAG
AAGTCTTGCAACAATTGCTGCACTTTGGGAATTCTAGTAGAACCACCCACAAGGACCACATCATGGACAGTACTCTTGTC