CANTATAdb - search

Detailed information on CNT30522726

BLAST search results

BLAST vs Swiss-Prot:
sp|P11143|HSP70_MAIZE, E-value = 8e-65

BLAST vs NONCODE:
NONVVIT003131, E-value = 2e-19

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30535317	Setaria italica	Eucalyptus grandis	57.56	83.95	83.4	476	forward
CNT30490395	Setaria italica	Olea europaea	45.22	46.87	80.48	374	forward
CNT30568743	Setaria italica	Actinidia chinensis	13.18	34.94	87.16	109	forward
CNT30647172	Setaria italica	Rosa chinensis	16.93	36.84	81.43	140	forward
CNT30578076	Setaria italica	Oryza barthii	58.16	59.83	86.49	481	forward

Expression of CNT30522726

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MPAAPPMSAPAPWYIFAMMGLQMPSSSFILSSNSSTSASWLLSSQLMAPSTASSIFFLSSGESLEAILSSLMVFLML*

>peptide 2 (43 aa)
MLLHSSLPLKKSCSSCCTLGMRVDPPTSTTSCTVLLSILASRRH

Sequence

>CNT30522726
TACTAGCTATTGATACCGTCACGCCTGCTGAGATTGCGTGAACTTATGCGTTCAGACTTCCACCCGTCCCGCGGCAAACCCATACATTGACGACACTTAA
TCGACCTCCTCAATCTTAGGACCAGCACCGCTCCCACCAGCCGGGGCATCCTCATCCATGCCTGCGGCGCCGCCCATGTCCGCGCCAGCGCCCTGGTACA
TCTTCGCGATGATGGGGTTGCAGATGCCCTCCAGCTCCTTCATCTTGTCCTCGAACTCGTCAACCTCTGCAAGCTGGTTGCTGTCCAGCCAGCTGATGGC
ACCATCGACGGCGTCCTCGATCTTCTTCTTGTCCTCCGGTGAGAGCTTGGAGGCGATCTTGTCGTCCTTGATGGTGTTCCTCATGTTGTAGGCGTAGTTC
TCGAGCGAGTTCTTGGCGTCCACCTTCTTCTTCACCTCCTCGTCCTCGGCCTTGTACTTCTCTGCCTCTTGCACCATCTTCTCGATCTCCTCCTTGCTCA
GCCGGCCCTTGTCGTTGGTGATCGTGATCTTGTTCTTCTGCCCTGTGGTCTTGTCCTCGGCAGAGACGTTGAGGATGCCGAGGGACAGCGGCGTGACGTC
GAGCAGTAGCAGATCCTGCACCTTCTCGTTGCCCTCGCCGCTGAGGATGGCGGCCTGAACAGCAGCACCGTACGCCACGGCCTCGTCGGGGTTGATGCTC
TTGCACAGCTCCTTGCCGTTGAAGAAGTCCTGCAGCAGCTGCTGCACCTTGGGGATGCGGGTGGATCCACCAACGAGCACGACGTCGTGCACGGTGCTCT
TGTCCATCTTGGCGTCGCGCAGGCACT