Detailed information on CNT304854


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673030Zea maysSetaria viridis63.851.0996.45141forward
CNT30617543Zea maysSesamum indicum49.7712.181.82110forward
CNT30161017Zea maysPistacia vera59.2857.9685.5131forward
CNT3094185Zea maysSolanum tuberosum42.997.1583.1695forward
CNT30568743Zea maysActinidia chinensis50.6835.986.61112forward
CNT30647172Zea maysRosa chinensis61.9936.0583.21137forward
CNT30683744Zea maysTriticum urartu66.0632.7484.93146forward
CNT30578217Zea maysOryza barthii48.8724.0592.59108forward
CNT30112153Zea maysFicus carica47.0611.5688.46104forward

Expression of CNT304854

Peptides detected in this lncRNA

>peptide 1 (46 aa)
RRARTCPAGCCRVSGPRDRGVTSSRSRSCTFSLPSPLRMAAWTAAP*

>peptide 2 (72 aa)
ESSNLPSRLLSRVRTQGQRGDVQQKQVLHLLIALTAQDGSLDSSTIGDSLIGVDVLAQLLAVEEVLEQLLHPG

Sequence

>CNT304854
CGGAGAGCTCGAACTTGCCCAGCAGGTTGTTGTCGCGTGTCCGGACCCAGGGACAGAGGGGTGACGTCCAGCAGAAGCAGGTCCTGCACCTTCTCATTGC
CCTCACCGCTCAGGATGGCAGCCTGGACAGCAGCACCATAGGCGACAGCCTCATCGGGGTTGATGTTCTTGCACAGCTCCTTGCCGTTGAAGAAGTCCTG
GAGCAGTTGCTGCACCCTGGG