Detailed information on CNT30673030


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C7X7|HSP7N_ARATH, E-value = 3e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617543Setaria viridisSesamum indicum57.2517.3881.01158forward
CNT30161017Setaria viridisPistacia vera36.2344.2587100forward
CNT30184977Setaria viridisSecale cereale43.8454.581.82121forward
CNT30225079Setaria viridisHordeum vulgare32.6133.2188.8990forward
CNT30568743Setaria viridisActinidia chinensis39.8635.2687.27110forward
CNT30451043Setaria viridisSaccharum spontaneum61.9620.0792.98171forward
CNT304854Setaria viridisZea mays51.0963.896.45141forward
CNT30647172Setaria viridisRosa chinensis60.8744.2181.55168forward
CNT30685597Setaria viridisTriticum urartu37.685295.19104forward
CNT30114516Setaria viridisEutrema salsugineum59.4256.1681.71164forward

Expression of CNT30673030

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MFLHSSLPLKKSWSSCCTLGILVEPPTRT

>peptide 2 (61 aa)
STNRTDHILSAIKQSKDNSRQQPPPGATADDSETSPAPSHCPHRSGWRPGQQHRRQQPHQG*

Sequence

>CNT30673030
AAAGTACCAACCGAACCGACCATATATTAAGTGCGATAAAACAGAGCAAAGATAACTCGCGGCAGCAACCTCCACCTGGCGCCACCGCAGACGACTCAGA
AACGAGTCCTGCACCTTCTCATTGCCCTCACCGCTCAGGATGGCGGCCTGGACAGCAGCACCGTAGGCAACAGCCTCATCAGGGTTGATGTTCTTGCACA
GCTCCTTGCCGTTGAAGAAGTCCTGGAGCAGCTGCTGCACCCTGGGAATCCTGGTGGAGCCACCGACAAGGACAAC