Detailed information on CNT30225079


BLAST search results

BLAST vs Swiss-Prot:
sp|P27322|HSP72_SOLLC, E-value = 4e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697339Hordeum vulgareOryza sativa53.8734.4386.99146forward
CNT30673030Hordeum vulgareSetaria viridis33.2132.6188.8990forward
CNT30522780Hordeum vulgareSetaria italica78.625.2184.98213forward
CNT30161017Hordeum vulgarePistacia vera31.3737.6185.8885forward
CNT30568743Hordeum vulgareActinidia chinensis76.0166.0379.13206forward
CNT30451043Hordeum vulgareSaccharum spontaneum33.2110.5686.6790forward
CNT304903Hordeum vulgareZea mays43.1723.9388.03117forward
CNT30647172Hordeum vulgareRosa chinensis32.8423.4283.1589forward
CNT30578076Hordeum vulgareOryza barthii49.4516.6784.33134forward
CNT30582481Hordeum vulgareEchinochloa crusgalli44.2825.7586.67120forward

Expression of CNT30225079

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MVVFLVMSTVMTPPAVSRPRDSGVTSRRRRSCTFSFPSPLRIAAWTAAP*

>peptide 2 (89 aa)
PGCRRDAGQLKLAKKVVVPVGGEDLLLLGGNGGVPCDEHGHDSSGSLKTKRQWGDIKEEKVLHLLVPLTAEDCSLDGSTIGNSFIRVNAL

>peptide 3 (36 aa)
PWVQAGCRTAQTCQEGCCPCRWRRPAPSWWEWWCSL*

Sequence

>CNT30225079
CCCTGGGTGCAGGCGGGATGCCGGACAGCTCAAACTTGCCAAGAAGGTTGTTGTCCCTGTAGGTGGAGAAGACCTGCTCCTTCTTGGTGGGAATGGTGGT
GTTCCTTGTGATGAGCACGGTCATGACTCCTCCGGCAGTCTCAAGACCAAGAGACAGTGGGGTGACATCAAGGAGGAGAAGGTCCTGCACCTTCTCGTTC
CCCTCACCGCTGAGGATTGCAGCCTGGACGGCAGCACCATAGGCAACAGCTTCATCAGGGTTAATGCTCTT