Detailed information on CNT30478496


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Arabidopsis halleriCorylus avellana31.7819.2191.1868reverse complement
CNT3021011Arabidopsis halleriCitrullus lanatus29.4411.3188.8963forward
CNT30727389Arabidopsis halleriCorchorus capsularis31.7830.3688.2468forward
CNT30525537Arabidopsis halleriPhaseolus vulgaris28.52090.1661forward
CNT30200314Arabidopsis halleriPisum sativum30.3728.1489.2365reverse complement
CNT30587521Arabidopsis halleriMusa acuminata38.7925.3889.1683forward
CNT30623316Arabidopsis halleriDaucus carota26.1718.4291.0756forward
CNT30620685Arabidopsis halleriCajanus cajan27.16.0691.3858forward
CNT30154558Arabidopsis halleriPrunus persica34.5824.1886.4974forward
CNT30572342Arabidopsis halleriVitis vinifera32.7112.5787.1470reverse complement
CNT3024649Arabidopsis halleriPopulus trichocarpa32.2422.8589.8669forward
CNT3050507Arabidopsis halleriCucumis sativus35.9825.2588.3177forward

Expression of CNT30478496

Peptides detected in this lncRNA

>peptide 1 (36 aa)
IESARLVGDYELGPIIFFLLAHYSXGLLSLRAEETV*

Sequence

>CNT30478496
GATTGAGTCGGCACGACTTGTGGGTGACTACGAACTTGGCCCGATAATTTTTTTTTTGTTGGCCCACTATTCTTNGGGGCTCTTGTCTCTTAGAGCGGAG
GAGACCGTGTGAGGCTGGTTTCACAGAGCAGCGTCCACCTTCCTCTCTTGACGGTGGAAGGATAACGGGCCGGTGCCTTCCGAGCCCACTATGACCCATT
AAGCCGACTCCATC