« Back to Manihot esculenta search


Detailed information on CNT30379440


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373911Manihot esculentaArabidopsis thaliana5052.8482.28158forward
CNT30403856Manihot esculentaBeta vulgaris44.9446.185.21142reverse complement
CNT30711330Manihot esculentaGlycine max27.5328.7187.3687reverse complement
CNT3045920Manihot esculentaPrunus dulcis45.8947.3987.59145reverse complement
CNT30158859Manihot esculentaPistacia vera49.6854.784.08157forward
CNT3084328Manihot esculentaVigna radiata47.1549.0183.22149reverse complement
CNT30212879Manihot esculentaHelianthus annuus47.7850.1784.11151reverse complement
CNT30620685Manihot esculentaCajanus cajan43.0414.2183.09136reverse complement
CNT3026785Manihot esculentaPopulus trichocarpa30.3831.6887.596reverse complement
CNT30175002Manihot esculentaVigna angularis33.5435.4583.96106reverse complement

Expression of CNT30379440

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRTRVATACNPSTARSERWSLLCEASLTRYPLL*

>peptide 2 (43 aa)
AYQNKKVTVQIRQPIRLCGLVWQRPVILPLPGARGGRCSVKPA*

>peptide 3 (35 aa)
MGKPEISQTESNHLGWDNVPSPHNPHLGDKPALLSS

Sequence

>CNT30379440
GCTTACCAGAACAAAAAGGTGACGGTCCAAATTAGGCAACCCATCCGGCTATGCGGACTCGTGTGGCAACGGCCTGTAATCCTTCCACTGCCAGGAGCGA
GAGGTGGTCGCTGCTCTGTGAAGCCAGCCTAACGCGGTACCCTCTGCTCTAGGAACCAGGAGAGCCAAGCCTTCGCTTGAGTCCCATGGTTCAACTCCCA
GCTTGGAATGGGCAAGCCAGAAATTAGCCAGACCGAATCCAACCATCTGGGCTGGGACAACGTCCCATCACCTCATAACCCCCACTTGGGTGACAAGCCC
GCGCTACTGAGCTCGG