Detailed information on CNT3082916


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94JS0|UCRI1_ARATH, E-value = 7e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30312704Brassica junceaCamelina sativa64.1150.9989.97309forward
CNT3061541Brassica junceaArabidopsis lyrata80.9153.7289.74390forward
CNT30479003Brassica junceaArabidopsis halleri80.9192.6489.74390forward

Expression of CNT3082916

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRTVTRTKPTTVVTSIRQRDASQVSADSNHH*

>peptide 2 (62 aa)
MSSSVLLLMKTGFPRHFTVTVVPGSMLPRSTSRDARASTSLVADMLTMSFRTRRRRTEAYTNL

Sequence

>CNT3082916
CGTGCTTTTATTCATAATCAACCGATGAGTAACTTGTTCTCTTCCAAGAAGCTGTAGGTTGGTACCTCCAGGTTGTATGGTGCAGGACCTTTCCTAATCC
TTCCAGAGATATCATAATGCGAACCGTGACACGGACAAAACCAACCACCGTAGTCACCAGCATTCGGCAAAGGGATGCATCCCAAGTGAGTGCAGACTCC
AACCACCACTAACCATTCCGGATTCTTGACCCTGACCGCATCTTCTTGCGGGTCTCTCAGAGAACCAAGATCAACACTATTAGCCAGCTTGATGTCATCT
TCAGTTCTTCTCCTGATGAAGACAGGCTTCCCACGCCACTTCACTGTCACAGTAGTTCCTGGCTCGATGCTCCCGAGGTCAACCTCGAGGGATGCAAGGG
CAAGCACATCTTTAGTTGCAGACATGCTGACGATGAGCTTCAGAACAAGAAGGCGGAGAACAGAGGCGTACACAAACCTCCC