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Detailed information on CNT30596866


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 2e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690525Oryza meridionalisOryza sativa53.2364.8693.43502forward
CNT30674859Oryza meridionalisSetaria viridis33.6281.790.85317forward
CNT30552186Oryza meridionalisOryza glaberrima44.9654.9295.75424forward
CNT30440278Oryza meridionalisAegilops tauschii54.5153.2692.61514forward
CNT30664875Oryza meridionalisTriticum dicoccoides37.9645.2694.97358forward
CNT30685298Oryza meridionalisTriticum urartu54.5155.7591.63514forward
CNT30345511Oryza meridionalisEragrostis tef54.5158.0192.02514forward
CNT30574920Oryza meridionalisOryza barthii53.2356.0996.22502forward
CNT30604554Oryza meridionalisOryza punctata55.4656.1294.26523forward

Expression of CNT30596866

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAWTKKPNMENMARRPFLISFTLSSANASG*

>peptide 2 (37 aa)
MIKSANQNNGQISTKTISWETNKIIIAKTSSSSSSSS*

>peptide 3 (31 aa)
YVFRLYYIIRMVIFWDRWSICFQPNRDDQIR*

Sequence

>CNT30596866
TATGTATTTAGACTATACTACATAATCAGAATGGTTATATTTTGGGATCGATGGAGTATTTGTTTCCAACCTAATAGAGATGATCAAATCCGCTAATCAG
AATAACGGACAGATAAGTACCAAGACCATCAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCATCTTCTTCTTCTTCTTAGTGTACAC
AACACCAACTCGATCATCATCTCGTCGCACCAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATTTCAACTACGCTCCCCT
CTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGCGGGCCCTTGCCGGT
GACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTAGTCG
AGCCCCCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGA
GCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCAGCCGTA
GTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCC
GCCGGCTTGGGCTTCGCGGCGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCACTGAGCTGTG
AGAGCTGAGAGAGATGGCGATGAGCGAGAGTGAGTTGGGAGTT