Detailed information on CNT30574920


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 2e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690525Oryza barthiiOryza sativa86.93100.5297.81778forward
CNT30674859Oryza barthiiSetaria viridis35.4281.792.11317forward
CNT30552186Oryza barthiiOryza glaberrima70.1781.3599.2628forward
CNT30440278Oryza barthiiAegilops tauschii62.1257.6290.83556forward
CNT30664875Oryza barthiiTriticum dicoccoides4045.2693.85358forward
CNT30685298Oryza barthiiTriticum urartu62.1260.390.47556forward
CNT30345511Oryza barthiiEragrostis tef62.1262.7591.19556forward
CNT30596866Oryza barthiiOryza meridionalis56.0953.2396.22502forward
CNT30604554Oryza barthiiOryza punctata62.1259.6691.91556forward

Expression of CNT30574920

Peptides detected in this lncRNA

>peptide 1 (84 aa)
PGTNQIKIILHNQVHCTSFINQPDNIVLHNLNERSKYSGTRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

>peptide 2 (30 aa)
MAWTKNPNMENMARRPFLISFTLSSANASG*

Sequence

>CNT30574920
CCAGGAACAAATCAGATAAAAATTATTTTACACAATCAGGTCCATTGTACTTCTTTCATCAACCAACCAGATAACATTGTTTTACACAATCTGAACGAAC
GAAGCAAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATC
CACACTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCCAGGTTCTCCAGTGGCCCCTTGC
CGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAACGCCTCGGGGTA
GTCGAGCCCCCCCTCGCTGAAGATCTGGGACCCCGCCTTGAACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAG
CCGAGCGCGCCCAGCATNGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACC
CGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGGACGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGA
CGCCGCGGCGGGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAACACCTTGGCATTGGCGACCGCCTTGCCGGCGAGGGCGGCA
GGGGAGGAGAGTGCCATGGTGGACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAGATGGCCACAGATGCTTTTGGAATGTGTGTCTTTTGAG