CANTATAdb - search

Detailed information on CNT30685298

BLAST search results

BLAST vs Swiss-Prot:
sp|P08963|CB22_HORVU, E-value = 2e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690525	Triticum urartu	Oryza sativa	59.87	71.32	90.76	552	forward
CNT30552186	Triticum urartu	Oryza glaberrima	45.99	54.92	92.22	424	forward
CNT30440278	Triticum urartu	Aegilops tauschii	98.16	93.78	97.02	905	forward
CNT30345511	Triticum urartu	Eragrostis tef	60.3	62.75	91.91	556	forward
CNT30596866	Triticum urartu	Oryza meridionalis	55.75	54.51	92.02	514	forward
CNT30574920	Triticum urartu	Oryza barthii	60.3	62.12	90.83	556	forward
CNT30604622	Triticum urartu	Oryza punctata	59.65	59.59	91.45	550	forward

Expression of CNT30685298

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFCFG*

>peptide 3 (95 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGPPSLKIWEPALNQTASPNLTPLRASSSGKTQPSAPSMAQRQWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30685298
GCAGAAGAACAGAGATGCCTTGATTGATCTGAAAAATAACCAGATACATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTC
GCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCAT
GAAGTTGTCGGCCTAGAGCTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTG
GTCGGCGAGGTTCTCCAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTC
ACCTTGAGCTCCGCGAAGGCCTCGGGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGA
GCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGA
CAGCCCCGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAG
CCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCA
CCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTTGCTTCGGGTGAGCTGAGGCTGG
CAGTGGGAGGCGCTGGTGGTCG