Detailed information on CNT30552186


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 4e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674859Oryza glaberrimaSetaria viridis41.0681.792.43317forward
CNT30393859Oryza glaberrimaTriticum turgidum53.553.7886.92413forward
CNT30440278Oryza glaberrimaAegilops tauschii54.9243.9492.69424forward
CNT30664875Oryza glaberrimaTriticum dicoccoides46.3745.2694.13358forward
CNT30685298Oryza glaberrimaTriticum urartu54.9245.9991.75424forward
CNT30345511Oryza glaberrimaEragrostis tef54.5347.5293.82421forward
CNT30596866Oryza glaberrimaOryza meridionalis54.9244.9695.75424forward
CNT30574920Oryza glaberrimaOryza barthii81.3570.1799.2628forward
CNT30604541Oryza glaberrimaOryza punctata68.9158.5991.73532forward

Expression of CNT30552186

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHRQWITSSSRFLANVSGSADSPAVSQP*

>peptide 2 (30 aa)
MAWTKNPNMENMARRPFLISFTLSSANASG*

>peptide 3 (95 aa)
IPFHTARQTDFPGTNQIKIILHNQVHCTSFINQPDNIVLHNLNERSKYSGTRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

Sequence

>CNT30552186
GTATTCCGTTCCATACCGCCAGGCAAACTGATTTCCCAGGAACAAATCAGATAAAAATTATTTTACACAATCAGGTCCATTGTACTTCTTTCATCAACCA
ACCAGATAACATTGTTTTACACAATCTGAACGAACGAAGCAAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAA
GCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACACTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGC
GAGGTGGTCGGCCAGGTTCTCCAGTGGCCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATC
TCCTTCACCTTGAGCTCGGCGAACGCCTCGGGGTAGTCGAGCCCCCCCTCGCTGAAGATCTGGGACCCCGCCTTGAACCACACGGCCTCGCCGAACTTCA
CGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGT
CTCCGGGTCGGCCGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCAC
GGGCTCCCCGACGCCGCGGCGGGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAAC