Detailed information on CNT30674859


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 4e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188029Setaria viridisSecale cereale45.6225.6597.18177forward
CNT30552186Setaria viridisOryza glaberrima81.741.0692.43317forward
CNT30664875Setaria viridisTriticum dicoccoides81.740.0894.01317forward
CNT3013355Setaria viridisZea mays79.6447.0389.32309forward
CNT30596866Setaria viridisOryza meridionalis81.733.6290.85317forward
CNT30574920Setaria viridisOryza barthii81.735.4292.11317forward
CNT30115779Setaria viridisOryza nivara46.1334.196.65179forward

Expression of CNT30674859

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MACTKNPNMENMARRPFLSSLTLSSGCRGSQGRPR*

>peptide 2 (34 aa)
YGDPTSGRSLHLAVRVIHPCPSSLIHLPGTKLVA*

>peptide 3 (40 aa)
TATPPPAGRFTSPCASSTHAHPRSFTCRGRSWWRRPRRCC*

>peptide 4 (88 aa)
LRRPHLRPVASPRRARHPPMPILAHSLAGDEVGGVGPGVVVDGVGEVVGEVLQGPLAGDDGLHEEPEHGEHGEAAVLELLDLELGLPR*

Sequence

>CNT30674859
CTACGGCGACCCCACCTCCGGCCGGTCGCTTCACCTCGCCGTGCGCGTCATCCACCCATGCCCATCCTCGCTCATTCACTTGCCGGGGACGAAGTTGGTG
GCGTAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCCAGGGGCCCCTTGCCGGTGACGATGGCCTGCACGAAGAACCCGA
ACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGGTTGCCGAGGTAGTCAAGGCCGCCCTCGCTGAAGATCTGGGAACCC
GCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCC