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Detailed information on CNT30345511


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-108

BLAST vs NONCODE:
NONSTUT001352, E-value = 8e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690525Eragrostis tefOryza sativa62.7571.8389.21556forward
CNT30552186Eragrostis tefOryza glaberrima47.5254.5393.82421forward
CNT30440278Eragrostis tefAegilops tauschii62.7557.6291.91556forward
CNT30664875Eragrostis tefTriticum dicoccoides40.8645.7695.3362forward
CNT30685298Eragrostis tefTriticum urartu62.7560.391.91556forward
CNT30596866Eragrostis tefOryza meridionalis58.0154.5192.02514forward
CNT30369242Eragrostis tefOryza glumipatula40.9737.4689.81363forward
CNT30574920Eragrostis tefOryza barthii62.7562.1291.19556forward
CNT30604554Eragrostis tefOryza punctata62.5359.4490.25554forward

Expression of CNT30345511

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSTNTHYWYNLPSACSILQYSYTHRYNSTYEYVRRLRYTRHPSFTLLLTCRGRSWWRRTMRCC*

>peptide 2 (35 aa)
MVMRASPKAPTLMGVPAIAGEEIAAMVEAAIADRA*

>peptide 3 (30 aa)
MACTKKPNMENMARRPFLISFTLSSAKASG*

>peptide 4 (29 aa)
MAHRQWITSSSRFLAKVSGSAERPAVSHP*

Sequence

>CNT30345511
TTATTTAATTTATTGAGTCATTCATCAGGCCCATCCAGAACATGAGCACAAATACACACTACTGGTACAATCTCCCATCGGCGTGCTCCATTTTACAGTA
CTCGTACACCCACAGGTACAATAGTACATACGAATACGTACGTCGACTACGGTACACACGACATCCCAGCTTCACCTTGCTGCTCACTTGCCGGGGACGA
AGTTGGTGGCGTAGGACCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGCACAAA
GAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTAGTCCAGCCCGCCCTCGCTGAAG
ATCTGGGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCCAGCAGCTCGGGGAAGACGCAGCCCAGCGCGCCCAGCATGGCCC
ACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCC
GGTCAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCCAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCACCTTGGGCTTGGCC
GCGGTCTTGCGCATGGTGATGCGGGCCTCGCCGAAGGCGCCCACCTTGATGGGGGTGCCGGCCATCGCCGGGGAGGAGATCGCAGCCATGGTGGAGGCAG
CCATTGCTGATCGAGCGTGAGCTGATGAGAGAGTGTGCTAGCTAGCTGTGCGATGAGTGTGCCGGAGCGGGCGACGCGGGCTAAAT