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Detailed information on CNT30664875


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 4e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690525Triticum dicoccoidesOryza sativa45.2646.2591.06358forward
CNT30674859Triticum dicoccoidesSetaria viridis40.0881.794.01317forward
CNT30552186Triticum dicoccoidesOryza glaberrima45.2646.3794.13358forward
CNT30440278Triticum dicoccoidesAegilops tauschii65.6153.7896.53519forward
CNT30345511Triticum dicoccoidesEragrostis tef45.7640.8695.3362forward
CNT30596866Triticum dicoccoidesOryza meridionalis45.2637.9694.97358forward
CNT30574920Triticum dicoccoidesOryza barthii45.264093.85358forward
CNT30604554Triticum dicoccoidesOryza punctata45.2638.4192.74358forward

Expression of CNT30664875

Peptides detected in this lncRNA

>peptide 1 (46 aa)
THQLLISTRPHMQHLPVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (41 aa)
HTNSSSRLALTCNIYQSGLLNLRTGRSRDRRRHTCSSIHQP*

>peptide 3 (30 aa)
MACTKKPNMENMARRPFLISFTLSSAKASG*

>peptide 4 (95 aa)
MAQRQWMTSSSRFLAKVARGVAGERAEVEHAVGAVPRAAGRRHLGLARRLAHGDAALAEGRRPGGLHRGAGHRRGGERHGRGRHRALRASWLCFG*

>peptide 5 (55 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGGAGGR

>peptide 6 (68 aa)
TPTPHLDSPSHATSTSPDYSISEREEAEIDDDTHAAASISHEVVGLELELTALTCRGRSWWRRPRRCC*

Sequence

>CNT30664875
ACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTACCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACAC
ACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGT
TGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGC
GAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAG
ACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCT
CCCGGTTCTTGGCGAAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCT
TGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAG
CGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCGT