Detailed information on CNT30690525


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522718Oryza sativaSetaria italica27.9129.3195.83216forward
CNT30440278Oryza sativaAegilops tauschii71.3257.291.49552forward
CNT30664875Oryza sativaTriticum dicoccoides46.2545.2691.06358forward
CNT30685298Oryza sativaTriticum urartu71.3259.8790.76552forward
CNT30345511Oryza sativaEragrostis tef71.8362.7589.21556forward
CNT30596866Oryza sativaOryza meridionalis64.8653.2393.43502forward
CNT30574920Oryza sativaOryza barthii100.5286.9397.81778forward
CNT30115779Oryza sativaOryza nivara38.1156.19100295forward

Expression of CNT30690525

Peptides detected in this lncRNA

>peptide 1 (39 aa)
YAERGERRASHRSLHESNGPHRRCSPEIHTHLPGTKLVA*

>peptide 2 (29 aa)
MAHRQWITSSSRFLANVSGSADSPAVSQP*

>peptide 3 (45 aa)
TRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

>peptide 4 (42 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARPSGSGTPP*

Sequence

>CNT30690525
GTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACACTCACTTGCCG
GGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCCAGGTTCTCCAGTGGCCCCTTGCCGGTGACGATGGCCT
GGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAACGCCTCGGGGTCGTCGGCGAGGCCGAG
CGGATCTGGGACCCCGCCTTGAACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGG
CCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCCGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTC
GCCGGTGAGGTAGGACGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCGGCGGGCTTGGGC
TTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAACACCTTGGCATTGGCGACCGCCTTGCCGGCGAGGGCGGCAGGGGAGGAGAGTGCCATGG
TGGACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAGATGGCCACAGATGCTTTTGGAATGTGTGTCTTTTG