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Detailed information on CNT30345518


BLAST search results

BLAST vs Swiss-Prot:
sp|P27492|CB21_TOBAC, E-value = 3e-133

BLAST vs NONCODE:
NONBNAT002216, E-value = 2e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690606Eragrostis tefOryza sativa68.8764.7591.99562forward
CNT30656613Eragrostis tefTriticum dicoccoides68.2663.3793.54557forward
CNT30470687Eragrostis tefSaccharum spontaneum68.7570.3993.05561forward
CNT30596879Eragrostis tefOryza meridionalis68.8751.7592.53562forward
CNT30369301Eragrostis tefOryza glumipatula61.1555.0892.99499forward
CNT30103295Eragrostis tefOryza rufipogon64.8343.590.74529forward
CNT30574765Eragrostis tefOryza barthii68.8763.3691.81562forward
CNT30582834Eragrostis tefEchinochloa crusgalli68.8758.6692.17562forward
CNT30117513Eragrostis tefOryza nivara68.7546.2190.37561forward

Expression of CNT30345518

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSTNTHYWYNLPSACSILQYSYTHRYNSTYEYVRRLRYTRHPSFTLLLTCRGRSWWRRTMRCC*

>peptide 2 (29 aa)
MAHRQWITSSSRFLAKVSGSAERPAVSHP*

Sequence

>CNT30345518
TGATAAATGGGTACCATGTGCAGAAAGATGTCATCTCTGTAAATAAAAATTTACAGCTCCATGCTTATTTAATTTATTGAGTCATTCATCAGGCCCATCC
AGAACATGAGCACAAATACACACTACTGGTACAATCTCCCATCGGCGTGCTCCATTTTACAGTACTCGTACACCCACAGGTACAATAGTACATACGAATA
CGTACGTCGACTACGGTACACACGACATCCCAGCTTCACCTTGCTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGACCATGCGTTGTTGTTGACGG
GGTCGGCGAGGTGGTCAGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCCAGCGGGTCGAAGCT
GCCGCCTGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGACGCGGTATCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATG
GCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGGGACCCGGCCTTGAACCACACGGCCTCGC
CGAACTTGACGCCGTTGCGGGCCAGCAGCTCGGGGAAGACGCAGCCCAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTT
GGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAAGGGG
CCCAGGTACTTGACGC