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Detailed information on CNT30581304


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 8e-147

BLAST vs NONCODE:
NONBNAT003428, E-value = 2e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671892Echinochloa crusgalliSetaria viridis32.8365.7496.42307forward
CNT30520579Echinochloa crusgalliSetaria italica53.947.6495.44504forward
CNT30564424Echinochloa crusgalliActinidia chinensis32.6257.3383.93305forward
CNT30243592Echinochloa crusgalliAvena sativa65.1378.7889.16609forward
CNT3013298Echinochloa crusgalliZea mays65.1370.5795.73609forward
CNT30362471Echinochloa crusgalliSorghum bicolor23.148.8796.76216forward
CNT3035078Echinochloa crusgalliCucumis melo34.3333.6584.42321forward
CNT30496441Echinochloa crusgalliDigitaria exilis60.6469.7493.12567forward
CNT30604338Echinochloa crusgalliOryza punctata39.5754.7391.35370forward
CNT30556551Echinochloa crusgalliPanicum hallii45.9972.8895.81430forward

Expression of CNT30581304

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MACTKNPNMENMARRPFLISFTLSSAKVTGSSARPSGSKYWPPG*

>peptide 2 (30 aa)
MLAQPTKKPSSLSPWRELGGRAGSRVGPCR*

>peptide 3 (48 aa)
LNLEICLSDSSVLNSTRFQGSLCSSKTPQKLKRTEAAHHLFQDHTHHN*

>peptide 4 (36 aa)
MQPSAPSMAHRPWITSRALFRAKASGSAESPAVSQP*

>peptide 5 (31 aa)
MRKPSTRPMRMTWKPSTARMLCACTRFGLPR*

Sequence

>CNT30581304
CCTGAATCTGGAAATTTGTTTATCTGATAGCAGTGTGCTAAATTCAACACGGTTTCAGGGCAGCTTGTGTTCGTCAAAAACTCCACAGAAACTGAAACGC
ACAGAAGCAGCACATCATCTGTTTCAGGATCACACCCATCATAACTGACAGAGAGCATACTACAAACCCAAAAACTCCTCCAGTACATACATTCCTGAAT
CCTGCGAACACGATATTTGCATTCATTGGTGGTGGTGGTACAAATGTGATGTCACAAACGAGTAGTCTACAATGTTGGCACAGCCCACAAAGAAGCCGTC
TAGCTTAAGCCCCTGGCGTGAACTTGGTGGTCGAGCAGGTTCTCGAGTGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAACCCGAACATGGAGAACA
TGGCGAGGCGGCCATTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGGTGACCGGGTCGTCGGCGAGGCCCAGTGGGTCGAAGTACTGGCCGCCGGGGTA
GAGGTTGTTGCCCTCGCCGACGCCGTCGAGGCCGTTGATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAAGCCCAGCACGGCGAGGATGCTC
TGCGCGTGCACCAGGTTTGGGTTGCCCAGGTAGTCGAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGC
GCACCCACTTCTCCAGCACCTCCGGGGTGATGCAGCCCAGCGCGCCCAGCATGGCCCATCGCCCGTGGATCACCTCCAGGGCCCTGTTCCGGGCGAAAGC
CTCCGGGTCCGCGGAAAGCCCGGCCGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGGATGGGGTCTGGGCCGAGAAGGGGCCCAGGTAC
TTGACGCGGTCCGGGCCGTACCACAGGTCGTTGCT