Detailed information on CNT30564424


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 3e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728364Actinidia chinensisCorchorus capsularis57.3343.783.28305forward
CNT3062573Actinidia chinensisArabidopsis lyrata56.251.6482.94299forward
CNT30362471Actinidia chinensisSorghum bicolor39.147.0680.77208forward
CNT3035078Actinidia chinensisCucumis melo69.7438.8980.86371forward
CNT30581304Actinidia chinensisEchinochloa crusgalli57.3332.6283.93305forward

Expression of CNT30564424

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASLPFLISFTLSSAKVTGSSARPSGSKYCPPG*

>peptide 2 (32 aa)
KSENYNHIQYTESRLELHNTITREMEVIMGSL*

Sequence

>CNT30564424
ACAAAAGTGAAAATTATAACCATATACAATATACAGAATCTCGTCTCGAATTACACAACACAATAACGAGAGAAATGGAAGTTATAATGGGGAGTTTATG
ATCCAGGCACAAACTTGGTGGCATAGACCCAGGCATTGTTAGCCACAGGGTTGTCAAGAACCCGAACATCGAGAACATGGCTAGCCTACCATTCTTGATC
TCCTTCACCTTGAGCTCAGCAAAGGTAACCGGGTCATCTGCAAGACCTAGTGGGTCAAAGTATTGTCCACCGGGGTAGAGGTCGTTACCCTCTCCAACCC
CGGGAATGCCGTTGATGCGGTAACCCTCAACGAGGCCCATTAGGACGACTTGGAAGCCTAGCACAGCCAAAATGCTCTGGGCATGGACCAAGTTGGGGTT
GCCCAAGTAGTCTAGCCCGCCGTCGGAGAAGATTTGGGCTCCGGCCTTGAACCAAACGGGGGTGATGCATCCCAGTGCTCCAAGCATGGCCCATCTCCCA
TGGATGACCTGAAAATCATTATTCATGTTAAA