Detailed information on CNT30604338


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 5e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520579Oryza punctataSetaria italica54.7334.9792.97370forward
CNT30221290Oryza punctataHordeum vulgare18.0555.7187.7122forward
CNT30564557Oryza punctataActinidia chinensis35.0659.2581.86237forward
CNT30554485Oryza punctataOryza glaberrima20.7125.1390.71140forward
CNT30243592Oryza punctataAvena sativa52.2245.6788.67353forward
CNT30656512Oryza punctataTriticum dicoccoides31.3639.4186.32212forward
CNT30454234Oryza punctataSaccharum spontaneum48.9644.7393.66331forward
CNT30132148Oryza punctataLolium perenne52.3739.5591.24354forward
CNT3013298Oryza punctataZea mays52.6641.2592.42356forward
CNT30362471Oryza punctataSorghum bicolor24.1136.8891.41163forward
CNT30370632Oryza punctataOryza glumipatula35.9531.5695.06243forward
CNT30574379Oryza punctataVitis vinifera44.0829.9580.54298forward
CNT30148272Oryza punctataBrachypodium distachyon43.6431.1585.76295forward
CNT30581304Oryza punctataEchinochloa crusgalli54.7339.5791.35370forward
CNT30496441Oryza punctataDigitaria exilis54.7345.5192.43370forward
CNT30556551Oryza punctataPanicum hallii54.7362.7193.24370forward

Expression of CNT30604338

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQPSAPSIAHRPWITSSALFLANASGSAERPAVWVP*

>peptide 2 (66 aa)
ADTQVATDRHHRCIKPRNPSLSSVSEFWIDHHSNVHSVQALVHRTMERVVYNGGSAVQEPGANLVA*

>peptide 3 (49 aa)
MAARLFRSPARTWWRRPMRCWRRDRRGRAGRSTGRRGRGRCRRQRRGGH*

>peptide 4 (33 aa)
MDHLQRPVPRERLRVGGETRRVGAMIVDAIGGG*

>peptide 5 (29 aa)
QLTHKLQLTDITDASNPETPHFLRFLNSG*

Sequence

>CNT30604338
CAGCTGACACACAAGTTGCAACTGACAGACATCACAGATGCATCAAACCCCGAAACCCCTCACTTTCTTCGGTTTCTGAATTCTGGATAGATCATCACAG
CAACGTACATTCTGTGCAAGCATTGGTACATCGAACGATGGAGAGAGTAGTCTACAATGGCGGCTCGGCTGTTCAGGAGCCCGGCGCGAACTTGGTGGCG
TAGACCCATGCGTTGTTGGCGACGGGATCGGCGAGGCCGAGCGGGTCGAAGTACTGGCCGCCGGGGTAGAGGTCGTTGCCGTCGCCAACGCCGGGGAGGC
CATTGATGCGGTAGCCCTCGACGAGGCCCATGAGGATGACCTGGAACCCGAGCACGGCGAGGATGCTCTGCGCGTGGACAAGGTTTGGGTTGCCGAGGTA
GTCGAGGCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCAGACGGGCTCCTTGAAGTCGACGCGCACCCACTTCTCGAGCACCTCCGGCGTGATG
CAGCCGAGCGCGCCCAGCATCGCCCACCGGCCATGGATCACCTCCAGCGCCCTGTTCCTCGCGAACGCCTCCGGGTCGGCGGAGAGACCCGCCGTGTGGG
TGCCATGATCGTGGACGCCATCGGCGGCGGGTGAGCTGCTGCTTCTGCTGCTGGATTCGCTAAGACTAACTACTCT