« Back to Oryza barthii search


Detailed information on CNT30577686


BLAST search results

BLAST vs Swiss-Prot:
sp|O22173|PABP4_ARATH, E-value = 1e-23

BLAST vs NONCODE:
NONORUT007190, E-value = 4e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671879Oryza barthiiSetaria viridis58.3773.4981.53352forward
CNT30520706Oryza barthiiSetaria italica58.3757.5281.53352forward
CNT30616950Oryza barthiiSesamum indicum19.7328.3387.39119forward
CNT3042659Oryza barthiiPrunus dulcis17.2530.6884.62104forward
CNT30562498Oryza barthiiActinidia chinensis21.399.6982.95129forward
CNT30555001Oryza barthiiOryza glaberrima68.3370.91100412forward
CNT30468473Oryza barthiiSaccharum spontaneum10.6121.7787.564reverse complement
CNT3013060Oryza barthiiZea mays23.8845.2888.89144forward
CNT30606636Oryza barthiiGossypium raimondii14.2620.4884.8886forward
CNT3068070Oryza barthiiLeersia perrieri14.9325.8691.1190forward
CNT30128674Oryza barthiiCorymbia citriodora9.2923.6387.556forward

Expression of CNT30577686

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MASATLALRASGDSSRCSTSVWSISSSMPVTFAACSCSSCDAAASLMGMPPISYGDGITPPPTPCIAGSGMPRPVGYR*

>peptide 2 (82 aa)
MDQKLLSSLCLGGNDAVIQRQRSKLLFRRRVRLDLLGRAKDLHGFSNLGLESLWRLEQVQHLSLVHLQQHASHLRSLLMLQL*

>peptide 3 (41 aa)
MLRRKRRRHSATEKQAAVQASRSSGSAGPCEGPPWLQQPWP*

>peptide 4 (33 aa)
VQIKTAKSCITHKIKDATRRHKVAIHTITFKAK*

Sequence

>CNT30577686
GTGCAGATCAAGACTGCTAAATCATGCATCACCCACAAAATAAAAGATGCTACCAGAAGACATAAAGTAGCAATCCATACGATAACTTTTAAAGCAAAAT
AAAAGATCCGAGCAAACAAAATACCCAATCCACGCGCATTGCCTAAATGCCTAGTTCAACTACCAATAAAACTAAAACTCCAATAAACCAAGTAACCAAG
TCGTTTTCAATTCTAGATAGATAAGATAACTGAGATATGGATCAAAAATTGCTGTCGTCGTTATGCTTAGGAGGAAACGACGCCGTCATTCAGCGACAGA
GAAGCAAGCTGCTGTTCAGGCGTCGCGTTCGTCTGGATCTGCTGGGCCGTGCGAAGGACCTCCATGGCTTCAGCAACCTTGGCCTTGAGAGCCTCTGGAG
ACTCGAGCAGGTGCAGCACCTCAGTCTGGTCCATCTCCAGCAGCATGCCAGTCACCTTCGCAGCCTGCTCATGCTCCAGCTGTGACGCAGCAGCATCTCT
CATGGGCATGCCTCCCATCTCATATGGAGATGGCATCACACCACCCCCAACACCATGCATTGCAGGATCAGGCATGCCACGTCCTGTAGGATACCGATAG
CCA