Detailed information on CNT30468473


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671879Saccharum spontaneumSetaria viridis43.5426.7288.28128reverse complement
CNT30520706Saccharum spontaneumSetaria italica48.323.287.32142reverse complement
CNT30555001Saccharum spontaneumOryza glaberrima34.3517.3883.17101reverse complement
CNT30577686Saccharum spontaneumOryza barthii21.7710.6187.564reverse complement

Expression of CNT30468473

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MLEFSSPCHWVVSNRCPLQVVVATAIPLDAKCLILACIVLGAVMPSPYEIGVKPIRDDGV*

>peptide 2 (35 aa)
FMMPMVQQGHQPQLTAGRCVDNVGIQQPMPLGGQQ*

>peptide 3 (33 aa)
MPPTGGGGYRYPIGREMLDPGMHSVGGCDAISI*

Sequence

>CNT30468473
CTTTATGATGCCTATGGTTCAGCAGGGGCACCAACCACAGCTTACTGCTGGTAGGTGTGTTGACAATGTTGGAATTCAGCAGCCCATGCCATTGGGTGGT
CAGCAATAGATGCCCCCTACAGGTGGTGGTGGCTACCGCTATCCCATTGGACGCGAAATGCTTGATCCTGGCATGCATAGTGTTGGGGGCTGTGATGCCA
TCTCCATATGAGATAGGAGTGAAGCCAATAAGAGATGATGGTGTGTGACAGCCTGTTTCAATTAGGTCACTAGCCACTGCAGTTGCTAATGCCC