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Detailed information on CNT30606636


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042659Gossypium raimondiiPrunus dulcis27.3833.9282.61115forward
CNT30562498Gossypium raimondiiActinidia chinensis21.196.6986.5289forward
CNT3013060Gossypium raimondiiZea mays21.928.9384.7892forward
CNT30128674Gossypium raimondiiCorymbia citriodora15.4827.4386.1565forward
CNT30410641Gossypium raimondiiPapaver somniferum22.1417.9586.0293forward
CNT3035726Gossypium raimondiiCucumis melo34.7636.6882.19146forward
CNT30577686Gossypium raimondiiOryza barthii20.4814.2684.8886forward

Expression of CNT30606636

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MKQGCHLKTMKPADQQLHQLAAVAVLQSSELPLLLQLWLLELLVTRASVKPPSGPSPEASLLLWLLHRVPAARQVDRDSP

>peptide 2 (33 aa)
QKFSPKRHTIKIPNPKKIKMNSEKPSSVTTITP*

Sequence

>CNT30606636
CAAAAATTTTCACCCAAAAGGCACACAATAAAAATTCCAAATCCAAAAAAGATAAAAATGAACAGTGAAAAACCAAGTTCAGTCACAACTATAACCCCAT
AACAGTGACAGTATTTTTCAAGTTCCAAAACAGTACTGAATCAATAATCCTTCTAACCAAGCCAACACTACTACCAACTCATGAAACAAGGTTGTCATTT
AAAGACAATGAAGCCAGCTGATCAGCAGCTCCACCAGCTTGCTGCTGTTGCTGTGCTACAGTCCTCAGAACTTCCATTGCTTCTGCAACTTTGGCTTTTA
GAGCTTCTGGTGACTCGAGCAAGTGTAAAACCTCCGTCTGGTCCATCTCCAGAAGCATCCCTGTTACTTTGGCTGCTGCATCGGGTTCCAGCTGCTCGAC
AAGTGGATAGAGATTCTCCC