Detailed information on CNT30555001


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FXA2|PABP8_ARATH, E-value = 1e-08

BLAST vs NONCODE:
NONORUT007190, E-value = 2e-157

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671879Oryza glaberrimaSetaria viridis22.7227.5687.12132forward
CNT30520706Oryza glaberrimaSetaria italica22.7221.5787.12132forward
CNT30468473Oryza glaberrimaSaccharum spontaneum17.3834.3583.17101reverse complement
CNT3013060Oryza glaberrimaZea mays12.5622.9689.0473forward
CNT3068070Oryza glaberrimaLeersia perrieri15.4925.8691.1190forward
CNT30577686Oryza glaberrimaOryza barthii70.9168.33100412forward

Expression of CNT30555001

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLRRKRRRHSATEKQAAVQASRSSGSAGPCEGPPWLQQPWP*

>peptide 2 (96 aa)
MDQKLLSSLCLGGNDAVIQRQRSKLLFRRRVRLDLLGRAKDLHGFSNLGLESLWRLEQVQAVTQQHLSWACLPSHMEMASHHPQHHALQDQACHVL*

>peptide 3 (39 aa)
QSLLHLVQIKTAKSCITHKIKDATRRHKVAIHTITFKAK*

>peptide 4 (32 aa)
MGMPPISYGDGITPPPTPCIAGSGMPRPVGYR*

Sequence

>CNT30555001
CCAAAGTTTGCTTCATTTGGTGCAGATCAAGACTGCTAAATCATGCATCACCCACAAAATAAAAGATGCTACCAGAAGACATAAAGTAGCAATCCATACG
ATAACTTTTAAAGCAAAATAAAAGATCCGAGCAAACAAAATACCCAATCCACGCGCATTGCCTAAATGCCTAGTTCAACTACCAATAAAACTAAAACTCC
AATAAACCAAGTAACCAAGTCGTTTTCAATTCTAGATAGATAAGATAACTGAGATATGGATCAAAAATTGCTGTCGTCGTTATGCTTAGGAGGAAACGAC
GCCGTCATTCAGCGACAGAGAAGCAAGCTGCTGTTCAGGCGTCGCGTTCGTCTGGATCTGCTGGGCCGTGCGAAGGACCTCCATGGCTTCAGCAACCTTG
GCCTTGAGAGCCTCTGGAGACTCGAGCAGGTACAGGCTGTGACGCAGCAGCATCTCTCATGGGCATGCCTCCCATCTCATATGGAGATGGCATCACACCA
CCCCCAACACCATGCATTGCAGGATCAGGCATGCCACGTCCTGTAGGATACCGATAGCCACGGCCGCCCCTAGCCATCATC