Detailed information on CNT30520706


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT82|MPC_ARATH, E-value = 2e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671879Setaria italicaSetaria viridis78.2710099.79479forward
CNT30616950Setaria italicaSesamum indicum22.7133.183.45139forward
CNT3042659Setaria italicaPrunus dulcis23.3742.1881.82143forward
CNT30562498Setaria italicaActinidia chinensis24.0211.0483.67147forward
CNT30555001Setaria italicaOryza glaberrima21.5722.7287.12132forward
CNT30468473Setaria italicaSaccharum spontaneum23.248.387.32142reverse complement
CNT3013060Setaria italicaZea mays50.9898.1191.03312forward
CNT30128674Setaria italicaCorymbia citriodora16.542.6282.18101forward
CNT30577686Setaria italicaOryza barthii57.5258.3781.53352forward

Expression of CNT30520706

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LNKATTVINTTIASTKQHIHKTKITNPRQN*

>peptide 2 (29 aa)
MEMASQPQHHACQDQAFHVLWDSGSHAHL*

>peptide 3 (59 aa)
MVSSKNCQQSSITQSSETFNWRRRRHSATDWPAAAQGRRWSAEDAGQSGGPPWLQQPWP*

>peptide 4 (50 aa)
MLGRAEDLHGFSNLGLESIWGLQQVQDLCLIHLQKHASHLGSLLMLQLVN*

Sequence

>CNT30520706
GCTCAACAAAGCAACAACGGTAATAAACACGACGATAGCTTCAACGAAACAACATATCCATAAGACCAAAATAACCAATCCACGACAAAACTAGACCAAC
CCCTAGTTCAGCTAATTATAGAGCAAGCTAAAACTCCAATAACCAAGCAAACCAAGTCATTGCACTCTAGATAGGATGGTATCAAGCAAAAATTGCCAGC
AGTCTTCGATCACTCAGTCATCGGAGACATTCAACTGGAGACGACGCCGTCATTCAGCGACAGATTGGCCAGCTGCTGCTCAGGGGAGGCGTTGGTCTGC
TGAAGATGCTGGGCAGAGCGGAGGACCTCCATGGCTTCAGCAACCTTGGCCTTGAGAGCATCTGGGGACTCCAGCAGGTGCAGGACCTCTGTCTGATCCA
TCTCCAAAAGCATGCCAGTCACCTTGGCAGCCTGCTCATGCTCCAGCTGGTCAACTAGAGGATACAGGTTGTGACACACCAGCATCTCTAATTGGCATCC
CACCCATCTCATATGGAGATGGCATCACAGCCCCAACACCATGCATGCCAGGATCAGGCATTCCACGTCCTGTGGGATAGCGGTAGCCACGCCCACCTCT
AGGGAACATCTG