Detailed information on CNT30671879


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FXA2|PABP8_ARATH, E-value = 5e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520706Setaria viridisSetaria italica10078.2799.79479forward
CNT30616950Setaria viridisSesamum indicum29.0233.183.45139forward
CNT3042659Setaria viridisPrunus dulcis29.8542.1881.82143forward
CNT30562498Setaria viridisActinidia chinensis30.6911.0483.67147forward
CNT30555001Setaria viridisOryza glaberrima27.5622.7287.12132forward
CNT30468473Setaria viridisSaccharum spontaneum26.7243.5488.28128reverse complement
CNT3013060Setaria viridisZea mays64.5197.1790.94309forward
CNT30128674Setaria viridisCorymbia citriodora21.0942.6282.18101forward
CNT30577686Setaria viridisOryza barthii73.4958.3781.53352forward

Expression of CNT30671879

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLGRAEDLHGFSNLGLESIWGLQQVQDLCLIHLQKHASHLGSLLMLQLVN*

>peptide 2 (59 aa)
MVSSKNCQQSSITQSSETFNWRRRRHSATDWPAAAQGRRWSAEDAGQSGGPPWLQQPWP*

>peptide 3 (28 aa)
MEMASQPQHHACQDQAFHVLWDSGSHAHL

Sequence

>CNT30671879
AGCAAGCTAAAACTCCAATAACCAAGCAAACCAAGTCATTGCACTCTAGATAGGATGGTATCAAGCAAAAATTGCCAGCAGTCTTCGATCACTCAGTCAT
CGGAGACTTTCAACTGGAGACGACGCCGTCATTCAGCGACAGATTGGCCAGCTGCTGCTCAGGGGAGGCGTTGGTCTGCTGAAGATGCTGGGCAGAGCGG
AGGACCTCCATGGCTTCAGCAACCTTGGCCTTGAGAGCATCTGGGGACTCCAGCAGGTGCAGGACCTCTGTCTGATCCATCTCCAAAAGCATGCCAGTCA
CCTTGGCAGCCTGCTCATGCTCCAGCTGGTCAACTAGAGGATACAGGTTGTGACACACCAGCATCTCTAATTGGCATCCCACCCATCTCATATGGAGATG
GCATCACAGCCCCAACACCATGCATGCCAGGATCAGGCATTCCACGTCCTGTGGGATAGCGGTAGCCACGCCCACCTCT