Detailed information on CNT30556788


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 2e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520600Panicum halliiSetaria italica61.3568.7292.41435forward
CNT30554485Panicum halliiOryza glaberrima30.3238.696.74215forward
CNT30243483Panicum halliiAvena sativa66.1562.8789.34469forward
CNT30453153Panicum halliiSaccharum spontaneum72.3664.6997.27513forward
CNT30370794Panicum halliiOryza glumipatula46.446.0195.14329forward
CNT30148272Panicum halliiBrachypodium distachyon60.9345.6288.19432forward
CNT30100870Panicum halliiOryza rufipogon29.0638.0892.23206forward
CNT30575574Panicum halliiOryza barthii52.7541.1986.9374forward
CNT30581538Panicum halliiEchinochloa crusgalli62.7649.0196.18445forward
CNT30116740Panicum halliiOryza nivara29.0624.0792.23206forward

Expression of CNT30556788

Peptides detected in this lncRNA

>peptide 1 (38 aa)
QLHIWIINCTISVSRAHKSQLTESIMQTPKLLQYNPES*

>peptide 2 (44 aa)
MACTKNPNMENMARRPFLISLTLSSAKVTGSSARPRGSKYWPPG*

>peptide 3 (31 aa)
MRKPSTRPMRMTWNPSTARMLCACTRLGLPR*

>peptide 4 (36 aa)
AAAYMDHKLHNIGFKSTQVTTDREHNANPKTPTVQS*

Sequence

>CNT30556788
GCAGCTGCATATATGGATCATAAATTGCACAATATCGGTTTCAAGAGCACACAAGTCACAACTGACAGAGAGCATAATGCAAACCCCAAAACTCCTACAG
TACAATCCTGAATCGTGAGATGGCAATATTTGCATTCATTGGTGGTGGTACAATCGAGTAGTCTACAATGGTGGTCCGGCACGAAGAGGCCGCCGTCTAG
CTTAAGACCCGGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTGGCGACGGGGTCGTCGAGGTGGTCGAGCAGGTTCTCGAGGGGGCCCTTGCCGGT
GACGATGGCCTGCACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTGACCTTGAGCTCGGCGAAGGTGACGGGGTCGTCG
GCGAGGCCCAGGGGGTCGAAGTACTGGCCGCCGGGGTAGAGGCCGTTGATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAATCCGAGCACGG
CGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCAGACGGGCTCCTT
GAAGTCCACGCGCACCCACTTCTCGAGCACCTCCGGGGTGATGCATCCCAGCGCGCCCAGCATCGCCCACCGCCCGTGGATCACCTCCAGCGCCCTGTTG
CGCGCGAAC