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Detailed information on CNT30453153


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 5e-143

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30394291Saccharum spontaneumTriticum turgidum47.9246.2985.79380forward
CNT30554485Saccharum spontaneumOryza glaberrima28.1240.0496.86223forward
CNT30243483Saccharum spontaneumAvena sativa74.2778.9589.47589forward
CNT30370794Saccharum spontaneumOryza glumipatula41.8746.4395.48332forward
CNT30148272Saccharum spontaneumBrachypodium distachyon67.7256.7188.27537forward
CNT30575574Saccharum spontaneumOryza barthii47.5441.5287.27377forward
CNT30581538Saccharum spontaneumEchinochloa crusgalli70.1161.2395.14556forward
CNT30556788Saccharum spontaneumPanicum hallii64.6972.3697.27513forward

Expression of CNT30453153

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRKPSTRPMRMTWNPSTARMLCACTRLGLPR*

>peptide 2 (36 aa)
MQPSAPSIAHRPWITSSALFRANASGSADSPAVSQP*

>peptide 3 (44 aa)
MAWTKKPNMENMARRPFLISLTLSSAKVTGSSARPNGSKYWPPG*

Sequence

>CNT30453153
GAATCAGTTAACAACTAAAACGGAGCAGATGGAATTGAAGACCAAAACTAGTCCAGTACGTTTCTGAGTTCTGAGAGAGCACAAGGATATTTGCATTCGT
TCATGGTACAAATGTAATGTCACAACACAAACGAGTAGTCTACAATGTCCCGGCACGCCGCCGTGTCCGGCTAGCTTAAGACCCTGGCGCGAACTTGGTG
GCGTAGACCCAGGCGTTGTTGGCGACGGGGTCGTCGAGGTGGTCGAGCAGGTTCTCGAGGGGCCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGA
ACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTGACCTTGAGCTCGGCGAAGGTGACGGGGTCGTCGGCGAGGCCCAACGGGTCGAAGTACTG
GCCGCCGGGGTAGAGGCCGTTGATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAACCCCAGCACGGCGAGGATGCTCTGCGCGTGCACCAGG
TTGGGGTTGCCGAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCGA
GCACCTCCGGGGTGATGCAGCCCAGCGCCCCCAGCATCGCCCACCGCCCGTGGATCACCTCCAGCGCCCTGTTCCGCGCGAACGCCTCCGGGTCCGCCGA
CAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGGACGGCGTCTGCGCGGAGAAGGGGCCCAGGTACTTGACGCG