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Detailed information on CNT30370794


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 4e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671892Oryza glumipatulaSetaria viridis29.7945.6194.84213forward
CNT30520434Oryza glumipatulaSetaria italica32.4562.3795.26232forward
CNT30243483Oryza glumipatulaAvena sativa43.7841.9689.14313forward
CNT30656512Oryza glumipatulaTriticum dicoccoides39.1652.0488.93280forward
CNT30453153Oryza glumipatulaSaccharum spontaneum46.4341.8795.48332forward
CNT30482942Oryza glumipatulaChara braunii24.7620.3791.53177forward
CNT30581538Oryza glumipatulaEchinochloa crusgalli38.7430.5193.86277forward
CNT30556788Oryza glumipatulaPanicum hallii46.0146.495.14329forward

Expression of CNT30370794

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MRTTWNPSTARMLWACTRLGLPSAPSIAHRPWITSSALFLANASGSAESPAVSHP*

>peptide 2 (44 aa)
MAWTKKPNMENMARRPFLISLTLSSAKVTGSSARPSGSKYWPPG*

Sequence

>CNT30370794
GAGTTAACTAAGCTTAAAGCAGCAGCTGACACATAAGTTGCAAACCCCAACTTTTTTCAGTTTCTGAATTCTGGATGGATCATATCAGATTCATCACAGC
ATCGTACAATCTGTGCAAGCATTGGTACATCGAGCGATGGAGAGAGAGAGAGTAGTCTACAATGGCGGCTGGGCCATTCACGAGCCCGGCGTGAACTTGG
TGGCGTAGACCCAGGCGTTGTTGGCGACGGGGTCGGCGAGGTGGTCGAGCAGGTTCTCCAAGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCC
GAACATGGAGAACATGGCGAGGCGGCCATTCTTGATCTCCTTGACCTTGAGCTCGGCGAAGGTGACGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGTAC
TGGCCGCCGGGGTAGAGGTCGCCGTTGATGCGGTAGCCCTCGACGAGGCCCATGAGGACGACCTGGAATCCCAGCACGGCGAGGATGCTCTGGGCGTGCA
CCAGGTTGGGGTTGCCGAGCGCGCCGAGCATCGCCCACCGGCCGTGGATCACCTCCAGCGCCCTGTTCCTCGCGAACGCCTCCGGGTCCGCGGAGAGCCC
CGCCGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCCCTCAGGTACGACGGCGTCTGCGCCGAGAATGGCCCCAGGTACTTCACCCTGTCCGGCCCGTAC
CACAGCTCCTTGCTC