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Detailed information on CNT30148272


BLAST search results

BLAST vs Swiss-Prot:
sp|P27523|CB23_HORVU, E-value = 1e-133

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30124630Brachypodium distachyonPhyscomitrium patens11.1935.6993.4106forward
CNT30243483Brachypodium distachyonAvena sativa60.8277.2187.33576forward
CNT30656512Brachypodium distachyonTriticum dicoccoides21.1237.1789.5200forward
CNT30453153Brachypodium distachyonSaccharum spontaneum56.7167.7288.27537forward
CNT30132048Brachypodium distachyonLolium perenne42.5643.0188.34403forward
CNT30620568Brachypodium distachyonCajanus cajan36.5449.1581.79346forward
CNT30370632Brachypodium distachyonOryza glumipatula36.7545.1989.37348forward
CNT30581538Brachypodium distachyonEchinochloa crusgalli58.8261.3488.51557forward
CNT30604338Brachypodium distachyonOryza punctata31.1543.6485.76295forward
CNT30556788Brachypodium distachyonPanicum hallii45.6260.9388.19432forward

Expression of CNT30148272

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRNPSTRPMRSTCEPRTARMLCAWTRLGFPR*

>peptide 2 (39 aa)
MEILPLDAAAATSRRGLATAGAMRVDTIFCGSGVSVCCSA

>peptide 3 (51 aa)
MVRLYTQRRVLQGPLPGNDGLHEEPEHGEHGEPAVLDLLHLELSKSDRVIG*

>peptide 4 (44 aa)
MACTKNPNMENMASRPFLISFTLSSAKVTGSSASPNGSKYCPPG*

>peptide 5 (46 aa)
MTASGPRMGPGTSPGLARTTARCSATAHRTENTLFSIAARLMLWCG*

Sequence

>CNT30148272
TGTCTTCACCCAGAAATAATTGAAACAGCCAGCTCACAAGTGCAGCAGACGACACAAAACGAACCAAAAAAACCTCCACTTATCTGAAGTTCCTTAATCC
ACATCGACCATTCTTTGCAATTTGCACGCATGGTACGTTTATACACACAGAGAAGAGTTCTCCAAGGGCCCCTTCCCGGTAACGATGGCCTGCACGAAGA
ACCCGAACATGGAGAACATGGCGAGCCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGTGACAGGGTCATCGGCTAGTCCCAACGGGTCGAA
ATACTGCCCGCCCGGGTAAAGCCCGTTGATGCGGAACCCTTCGACGAGGCCCATGAGGAGCACCTGCGAGCCGAGGACCGCCAGGATGCTCTGCGCGTGG
ACCAGGTTGGGGTTTCCCAGGTAGTCGAGCCCGCCCTCGGAGAAGATCTGGGCGCCCGCCTTGAACCACACGGGCTCCTTGAACTCCACGCCCACCCACT
TCTGGAGCACCTCCGGGAACACGCAGCCGAGGGCGCCGAGCATCGCCCATCGCCCGTGGATCACCTCCAGCGCCCTGTTCCGGGCGAAGGCTTCAGGGTC
GGCCGATAGCCCGGCCGTGTCCCAGCCGTAGTCGCCCGGGAACTCGCCGCTCAGGTATGACGGCGTCTGGGCCGAGAATGGGCCCAGGTACTTCACCCGG
TCTGGCCCGTACCACAGCTCGTTGCTCTGCGACCGCACACAGAACAGAGAACACTTTGTTTAGCATTGCAGCTAGGCTGATGCTGTGGTGTGGTTGATTG
AAGGAATTTTTGGGGAATGCACGTACCATGGAGATCCTGCCGTTGGACGCGGCGGCGGCGACGTCGCGGAGGGGGCTGGCGACGGCGGGGGCCATGAGGG
TCGATACCATCTTCTGCGGCTCCGGCGTCTCAGTTTGCTGCTCTGCG