Detailed information on CNT30520600


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 4e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554485Setaria italicaOryza glaberrima34.4439.1488.53218forward
CNT30243483Setaria italicaAvena sativa64.9355.0984.43411forward
CNT30451394Setaria italicaSaccharum spontaneum68.2550.7695.83432forward
CNT30581538Setaria italicaEchinochloa crusgalli63.5144.2791.54402forward
CNT30556788Setaria italicaPanicum hallii68.7261.3592.41435forward

Expression of CNT30520600

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVAGTKQPSSFLRPGRCLRRGRRGGRAGSRGAPCR*

>peptide 2 (36 aa)
KCKEAATCIDRKSAVQHIICFRSTQATTDREHNAHS*

>peptide 3 (44 aa)
MACTKNPNMENMARRPFLISLTLSSAKVTGSSARPSGSKYWPPG*

Sequence

>CNT30520600
TGAAATGCAAAGAGGCAGCTACATGTATAGATCGTAAATCAGCAGTTCAGCACATCATCTGTTTCAGGAGCACACAAGCCACAACTGACAGAGAGCATAA
TGCACATTCCTGAATCCTGAGAACAAGGTATTTGCATTAATTGGTGGTACAAAAGTAACGAGTAGTCTACAATGGTGGCAGGCACGAAGCAGCCGTCTAG
CTTCTTAAGACCCGGGCGTTGTTTGCGACGGGGTCGTCGAGGTGGTCGAGCAGGTTCTCGAGGGGCCCCTTGCCGGTGACGATGGCCTGCACGAAGAATC
CGAACATGGAGAACATGGCGAGGCGTCCGTTCTTGATCTCCTTGACCTTGAGCTCGGCGAAGGTGACGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGTA
CTGGCCGCCCGGGTAGAGGTTGTTGCCCTCGCCGACGCCGTCGAGGCCGATGACCTGGAAGCCCAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTG
GGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCGAGCA
CCTCGGGCGTGATGCAGCCCAGCGCGCCCAGCA