Detailed information on CNT30554485


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 4e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520600Oryza glaberrimaSetaria italica39.1434.4488.53218forward
CNT30526626Oryza glaberrimaPhaseolus vulgaris38.7862.0782.41216forward
CNT30243483Oryza glaberrimaAvena sativa38.7828.9590.74216forward
CNT30453153Oryza glaberrimaSaccharum spontaneum40.0428.1296.86223forward
CNT30362471Oryza glaberrimaSorghum bicolor17.5922.1795.9298forward
CNT30370632Oryza glaberrimaOryza glumipatula55.8340.3999.04311forward
CNT30581538Oryza glaberrimaEchinochloa crusgalli38.623.6895.81215forward
CNT30604338Oryza glaberrimaOryza punctata25.1320.7190.71140forward
CNT30556788Oryza glaberrimaPanicum hallii38.630.3296.74215forward

Expression of CNT30554485

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MERESSLQWRLGHSRARRELGGVDPGVVGDGKPNMENMARRPFLISLTLSSAKVTGSSARPSGSKYWPPG*

>peptide 2 (43 aa)
MDHIRFITASYNLCKHWYIERWRERVVYNGGWAIHEPGVNLVA*

>peptide 3 (40 aa)
MPQQISNNQTLGLVWIITKYTNVQIKTSKELTKLKAAADT*

Sequence

>CNT30554485
CAGTACTTGATGCAAGAAAATGCCACAGCAAATTAGCAATAATCAAACACTAGGTCTCGTATGGATCATTACAAAGTACACAAATGTACAAATTAAAACA
TCAAAAGAGTTAACTAAGCTTAAAGCAGCAGCTGACACATAAGTTGCAAACCCCAACTTTTTTCAGTTTCTGAATTCTGGATGGATCATATCAGATTCAT
CACAGCATCGTACAATCTGTGCAAGCATTGGTACATCGAGCGATGGAGAGAGAGAGTAGTCTACAATGGCGGCTGGGCCATTCACGAGCCCGGCGTGAAC
TTGGTGGCGTAGACCCAGGCGTTGTTGGCGACGGGAAGCCGAACATGGAGAACATGGCGAGGCGGCCATTCTTGATCTCCTTGACCTTGAGCTCGGCGAA
GGTGACGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGTACTGGCCGCCGGGGTAGAGGCCGTTGATGCGGTAGCCCTCGACGAGGCCCATGAGGACGACC
TGGAATCCCAGCACGGCGAGGATGCTCTGGGCGTGCACCAGGTTGGGGTTGCCGAGG