Detailed information on CNT30116740


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393445Oryza nivaraTriticum turgidum54.3259.3988.82465forward
CNT30665660Oryza nivaraTriticum dicoccoides54.3266.3388.6465forward
CNT30142773Oryza nivaraLolium perenne44.5141.186.09381forward
CNT30685226Oryza nivaraTriticum urartu54.3274.6488.39465forward
CNT30100870Oryza nivaraOryza rufipogon60.495.5699.61517forward
CNT30498755Oryza nivaraDigitaria exilis28.2742.3890.5242forward
CNT30556788Oryza nivaraPanicum hallii24.0729.0692.23206forward

Expression of CNT30116740

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRGRRGSRWGPCR*

>peptide 2 (35 aa)
SWLRCRSYNNDTSLIRSSLGCGLRLTLNLDPKKQR*

>peptide 3 (94 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKVSGSSARPSGSKAPPGYTL*

Sequence

>CNT30116740
TAGCTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTCGATCATCCCTTGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAG
CAAAGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACACACACACACACACAATTAAGGTACATACATACATGCACTGCTGC
AACTGCAACTGCAGGGTCGGTGCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGAC
GAAGTTGGTGGCGTATGCCCAGGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACG
AAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGTGTCAGGGTCGTCGGCGAGGCCGAGCGGGT
CGAAGGCGCCGCCTGGGTACACCTTGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTT
CTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATTGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGG
TCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGAAGCTGGTGGTCTGGTGCAGCGCCGACGCGGCCATCGTTCTAA
CGAGGGCGATGCGGCGGCGGTTGGGTTGGTTTTTTGTGGTGTGTGGTGGAGATGGG