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Detailed information on CNT30581538


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 3e-137

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520600Echinochloa crusgalliSetaria italica44.2763.5191.54402forward
CNT30554485Echinochloa crusgalliOryza glaberrima23.6838.695.81215forward
CNT30243483Echinochloa crusgalliAvena sativa64.178.0289.18582forward
CNT30453153Echinochloa crusgalliSaccharum spontaneum61.2370.1195.14556forward
CNT30620568Echinochloa crusgalliCajanus cajan43.7256.3982.12397forward
CNT30370794Echinochloa crusgalliOryza glumipatula30.5138.7493.86277forward
CNT30148272Echinochloa crusgalliBrachypodium distachyon61.3458.8288.51557forward
CNT30556788Echinochloa crusgalliPanicum hallii49.0162.7696.18445forward

Expression of CNT30581538

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLAQPTKKPSSLSPWRELGGRAGSRVGPCR*

>peptide 2 (36 aa)
MQPSAPSMAHRPWITSRALFRAKASGSAESPAVSQP*

>peptide 3 (31 aa)
MRKPSTRPMRMTWKPSTARMLCACTRFGLPR*

>peptide 4 (44 aa)
MACTKNPNMENMARRPFLISFTLSSAKVTGSSARPSGSKYWPPG*

>peptide 5 (48 aa)
LNLEICLSDSSVLNSTRFQGSLCSSKTPQKLKRTEAAHHLFQDHTHHN*

Sequence

>CNT30581538
CCTGAATCTGGAAATTTGTTTATCTGATAGCAGTGTGCTAAATTCAACACGGTTTCAGGGCAGCTTGTGTTCGTCAAAAACTCCACAGAAACTGAAACGC
ACAGAAGCAGCACATCATCTGTTTCAGGATCACACCCATCATAACTGACAGAGAGCATACTACAAACCCAAAAACTCCTCCAGTACATACATTCCTGAAT
CCTGCGAACACGATATTTGCATTCATTGGTGGTGGTGGTACAAATGTGATGTCACAAACGAGTAGTCTACAATGTTGGCACAGCCCACAAAGAAGCCGTC
TAGCTTAAGCCCCTGGCGTGAACTTGGTGGTCGAGCAGGTTCTCGAGTGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAACCCGAACATGGAGAACA
TGGCGAGGCGGCCATTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGGTGACCGGGTCGTCGGCGAGGCCCAGTGGGTCGAAGTACTGGCCGCCGGGGTA
GAGGCCGTTGATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAAGCCCAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTTGGGTTGCCC
AGGTAGTCGAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCCAGCACCTCCGGGG
TGATGCAGCCCAGCGCGCCCAGCATGGCCCATCGCCCGTGGATCACCTCCAGGGCCCTGTTCCGGGCGAAAGCCTCCGGGTCCGCGGAAAGCCCGGCCGT
GTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGGATGGGGTCTGGGCCGAGAAGGGGCCCAGGTACTTGACGCGGTCCGGGCCGTACCACAGG
TCGTTGCT